Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium603g00020 ATGAAGAATGCGTGCAATGTGGTGCAGGCCATGAAACCCACCCTGCTAATGCTGGTGGTGCAAGTAGCATTTGCCGGAGTTAATATCTTCTACAAGCTTGCCGTCAACGATGGCATGAACTTGAAAGTCATTGTTGCCTACCGTTTTCTTTTTGCCACCGCTTTCATTGTTCCACTTGCTCTCATTCTTGAAAGGAAGAAGAGGACAAAGATGAATTGCACCATACTGTTTCAGTCATTTCTTTGCGGCTTATTTGGGGGATCTTTAGCTCAGAATTTCTACTTGCGAGCTCTGTCCTTAACATCTGCAACATTTGCATCTGCAATGGCTAATCTTGTACCAGGCATAACCTTTATCATGGCAGTTTGCTTTGGTTTGGAAAGATTGAATTTGAGAACAACATTCGGAAAGGCCAAAATAATGGGTACATTAATTGGAATTGCTGGAGCAATGGTTCTTACATTCGTTAAAGGTAAAGATATTGAGATAGGGACGTTTCACTTTAACCTTTTGCCTGAGAATGGCGCACACCCACAGGTGCAGGCTACCGGCGGCGGTGCCAAGACCGTCATGGGTGCTTTGTGCGCTCTGGCTAGTGGAGTCAGTTATGCGTTCTGGCTCATCGTTCAGGCGAAGATGAGTGAAAGATATCCTCATCCCTACTCTAGCACAGCGTTGATGTCACTGTGGGGAGCATTAGTGTCCATTATGTTTGCACTTTTCGTTGAGAGGGACTGGAATCAGTGGAGGTTGGGTTGGAATATTAGGCTTTGGACTGCAGCATATGCGGGTATTGTGGTTTCTGGGATTATGGTGGTTGTGATTTCATGGTGCATCCGCATGAGAGGCCCATTATTTGCCTCTGTTTTTAACCCTCTGATGCTTGTAATAGTCGCCTTGGCTGGTTCTACCATGTTGAAGGAGAAGCTACACCTTGGATGCATTATTGGAGCTGTGCTGATTGTGTGTGGCTTATACATGGTTTTATGGGGTAAAAGTAAAGAGATGAAGAAAAATAATCAATTGGTGCCAGCAGCAGATAACAGCCATGAGGATGAGTCTGATAGGGTGGAAGTAGTAGTTAGGGATGAAGTAGAAGATAAAAGCAACCAAAAGAAAAGACATAAAAACGATGAAAAAGTAATTGGGGATTACCACGAAGATCGAAAGCTAGAGCAGAATTTAGATGTACCAAGTCAGAGTAATCAGGGAAGAGATGAGGAAAATTCTAATACTGTTTTCTGTACTTAA 1251 0.4341 MKNACNVVQAMKPTLLMLVVQVAFAGVNIFYKLAVNDGMNLKVIVAYRFLFATAFIVPLALILERKKRTKMNCTILFQSFLCGLFGGSLAQNFYLRALSLTSATFASAMANLVPGITFIMAVCFGLERLNLRTTFGKAKIMGTLIGIAGAMVLTFVKGKDIEIGTFHFNLLPENGAHPQVQATGGGAKTVMGALCALASGVSYAFWLIVQAKMSERYPHPYSSTALMSLWGALVSIMFALFVERDWNQWRLGWNIRLWTAAYAGIVVSGIMVVVISWCIRMRGPLFASVFNPLMLVIVALAGSTMLKEKLHLGCIIGAVLIVCGLYMVLWGKSKEMKKNNQLVPAADNSHEDESDRVEVVVRDEVEDKSNQKKRHKNDEKVIGDYHEDRKLEQNLDVPSQSNQGRDEENSNTVFCT 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium603g00020 416 PANTHER WAT1-RELATED PROTEIN 12 342 IPR030184 GO:0016020|GO:0022857
Vium603g00020 416 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Vium603g00020 416 MobiDBLite consensus disorder prediction 395 416 - -
Vium603g00020 416 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020
Vium603g00020 416 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020
Vium603g00020 416 SUPERFAMILY Multidrug resistance efflux transporter EmrE 230 334 - -
Vium603g00020 416 MobiDBLite consensus disorder prediction 364 416 - -
Vium603g00020 416 MobiDBLite consensus disorder prediction 364 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium603g00020 Vium-Chr603 101822 105376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium603g00020 1 356 Nodulin-like Gene Family AT1G68170 43.539 1.53e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium603g00020 - - vra:106774988 691.034