Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium603g00019 ATGGATCACCAAGCTGACACTAACAGAACTGATTTGATGACTATCACACGCTTTGTTCTGAATGAACAGTCTAAGTATCCCGAATCACGTGGTGATTTCACCATCCTTCTCAATACCATTGTTCTTGGTTGCAAATTTGTTTGTTCTGCTGTTGGCAAGGCTGGGTTGGCTAAACTCATAGGACTTGCTGGAGAGACCAATGTTCAAGGGGAGGAGCAAAAGAAATTGGATGTACTTTCAAATGAAGTATTTGTGAAAGCCTTAATTAGCAGTGGACGCACATCCGTTCTTGTTTCCGAAGAAGTTGGAGAGGCCATATTTGTGCCACGATCACACCGTGGCAAATACATTGTTGTGTTTGATCCTTTGGATGGATCCTCAAACATTGACTGCGGAGTTTCTATTGGAACTATCTTTGGAATTTACATGGTAAAGAATGAGGCTAAAGTAAGTCTTGAAGATGCAATGCAACCTGGAAACCAAATGCTAGCAGCAGGTTACTGCATGTATGGAAGCTCTTGCACGTTCGTGCTTAGCACAGGAAATGGAGTGAATGGTTTTACACTCGATCCTTCCCTTGGGGAGTTCATATTAACTCACCCCAACATCAAGATACCAAGGAAAGGAAATATTTATTCCGTGAATGAAGGAAATGCCAAAAACTGGGATGAACCAACCACTAAATACGTACAAAAGTGCAAGTTTCCTCAAGATGGTTCACCACCAAAGTCTCTTAGGTACATAGGAAGGGTTGCTGACATCCATCGAACATTGCTTTATGGTGGTATCTTCATGTACCCTGCTGATATAAAGAGTCCACATGGAAAGCTACGGATTCTGTATGAAGTATTTCCAATGTCATATTTGATGGAGCAAGCAGGAGGTCAGGCTTTCACAGGAAAACGACGGGCTCTTGACTTGGTTCCAAGAGAATTACATGAACGATCACCAATATTCCTAGGCAGTTACGATGACATTGAGCAAATCAAAGAGCTTTATGCATCATCCAAAGCAGATGGTGCATGA 1026 0.4211 MDHQADTNRTDLMTITRFVLNEQSKYPESRGDFTILLNTIVLGCKFVCSAVGKAGLAKLIGLAGETNVQGEEQKKLDVLSNEVFVKALISSGRTSVLVSEEVGEAIFVPRSHRGKYIVVFDPLDGSSNIDCGVSIGTIFGIYMVKNEAKVSLEDAMQPGNQMLAAGYCMYGSSCTFVLSTGNGVNGFTLDPSLGEFILTHPNIKIPRKGNIYSVNEGNAKNWDEPTTKYVQKCKFPQDGSPPKSLRYIGRVADIHRTLLYGGIFMYPADIKSPHGKLRILYEVFPMSYLMEQAGGQAFTGKRRALDLVPRELHERSPIFLGSYDDIEQIKELYASSKADGA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium603g00019 341 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 205 333 IPR044015 -
Vium603g00019 341 Hamap Fructose-1,6-bisphosphatase class 1 [fbp]. 13 335 IPR000146 GO:0005975|GO:0016791
Vium603g00019 341 PRINTS Fructose-1,6-bisphosphatase signature 155 178 IPR028343 GO:0042132
Vium603g00019 341 PRINTS Fructose-1,6-bisphosphatase signature 309 334 IPR028343 GO:0042132
Vium603g00019 341 PRINTS Fructose-1,6-bisphosphatase signature 75 101 IPR028343 GO:0042132
Vium603g00019 341 PRINTS Fructose-1,6-bisphosphatase signature 212 239 IPR028343 GO:0042132
Vium603g00019 341 PRINTS Fructose-1,6-bisphosphatase signature 38 65 IPR028343 GO:0042132
Vium603g00019 341 PRINTS Fructose-1,6-bisphosphatase signature 186 209 IPR028343 GO:0042132
Vium603g00019 341 Gene3D - 204 340 - -
Vium603g00019 341 ProSitePatterns Fructose-1-6-bisphosphatase active site. 275 287 IPR020548 GO:0005975|GO:0042578
Vium603g00019 341 FunFam Fructose-1,6-bisphosphatase class 1 204 337 - -
Vium603g00019 341 SUPERFAMILY Carbohydrate phosphatase 8 333 - -
Vium603g00019 341 CDD FBPase 20 333 IPR000146 GO:0005975|GO:0016791
Vium603g00019 341 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 3 334 IPR000146 GO:0005975|GO:0016791
Vium603g00019 341 PIRSF FBPtase_SBPase 9 338 IPR000146 GO:0005975|GO:0016791
Vium603g00019 341 FunFam Fructose-1,6-bisphosphatase, cytosolic 4 203 - -
Vium603g00019 341 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 13 201 IPR033391 -
Vium603g00019 341 Gene3D - 4 203 - -
Vium603g00019 341 PIRSF FBPtase 9 338 IPR028343 GO:0042132
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium603g00019 Vium-Chr603 95132 98157 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium603g00019 FBPase 1.5e-78 CL0171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium603g00019 K03841 - gmx:100797157 632.484