Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium603g00007 ATGGCAGATACCAATGTCAACCTTCCACCAGGCTTTCGATTCTATCCCACAGATGAAGAGCTCATAGTCCATTTCCTTCACAGAAAAGCCTCACTTTTGCCTTGCCACCCGGATGTCATCCCTGATCTTGAGCTCTACCAATATGATCCATGGGAGCTTCATGGTAGAGCTTTGGCTGAGGGAAACCAATGGTACTACTACAGCAGAAGGACGCAGAATAGAGTCACTGGCAATGGGTATTGGAAACCAACGGGAATGGAAGAGCCAGTGGTTTCAAGCTCAAACAGCAAGAGAGTTGGTATGAAGAAATATTTTGTTTTTCATGTAGGAGAAGATGCTACTGCTATCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCCTCTACCAGATCATCCAAAAGAAAACCTCAACCAAAATCAGATTACAATAAATGGGTGATATGTCGTGTTTATGAGCGTAACGGAGAGGAGGACAATGGAACAGAGCTCTCATGTTTGGATGAAGTATTCTTGTCATTGGATGATGATCTTGATGAAATAAGCTTACCAAATTAG 570 0.4211 MADTNVNLPPGFRFYPTDEELIVHFLHRKASLLPCHPDVIPDLELYQYDPWELHGRALAEGNQWYYYSRRTQNRVTGNGYWKPTGMEEPVVSSSNSKRVGMKKYFVFHVGEDATAIKTNWIMQEYRLSDSASSTRSSKRKPQPKSDYNKWVICRVYERNGEEDNGTELSCLDEVFLSLDDDLDEISLPN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium603g00007 189 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Vium603g00007 189 FunFam NAC domain-containing protein 104 17 161 - -
Vium603g00007 189 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Vium603g00007 189 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Vium603g00007 189 PANTHER NAC TRANSCRIPTION FACTOR 56 8 164 - -
Vium603g00007 189 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium603g00007 Vium-Chr603 52507 53983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium603g00007 1 173 NAC Transcription Factor Family AT1G61110 40.104 1.32e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium603g00007 NAM 5.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium603g00007 - - gmx:100793989 357.836