Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6039g00002 ATGGCGACTCATCATCTTCCCGACCACTTCAAGTGTCCAATTTCCCTAGAAATAATGTCGGACCCTGTAATCCTCTCTTCCGGTCACACCTTCGACCGTTCCTCAATCCAACGTTGGCTAGACGCAGGCTACAGAACATGTCCAATTACCAAGTTGCCCCTCCCCGACCAACCTTCCCTTATTCCCAACCACGCGCTCCGAAGCTTAATCTCCAACTATACCCTCCTACCTCCTCTTCACCAAACCATTTCCCAACCTCAAACCCTAATTTCCACCCTCACTTCTCCCTCTTCTTCCTCCGATTCCAAAATCGATTCCCTCCGCCACCTCACGCGCCTCTCCAAGCGTGACTCCGCCTTCCGCCGCCACCTTGCTGACTCAGCTGCTGTCCCCGCCGTCCTCGCCGCCGTCGTCGACCCTGCTCTCCAGGAGAAGGCGCTCCCGCTTCTGCTCAACCTCACCCTCGACGACGACTCTAAGGTCGGCCTCGTCGCCGAGGGCGTCGTCGGGCGCCTCGTCGCCGTTCTCCTCAACGCTTCGCCTGACTGCCGCGCCGTCGCGGCCACCATCGTCACCAGCCTCTCCGTCGTCGAGGTCAACAAGGCCACCATCGGCGCTTTCCCGGCGGCGATCGCGGCGCTCGTGGCGATACTCCGTGACGGAAAAGGGAGGGAGAGGAAGGAGGCCGCCACCGCGCTTTACGCTCTCTGCTCCTTTCCGGATAACCGGAGAAGAGCCGTGAGTTGCGGCGCTGTGCCGATTCTGTTGCGGAACGTAGAAATTGGATTGGAACGGTGCGTTGAGGTAATTGGCGTTCTGGCGAAGTGTAAGGAAGGGAGGGAGCAAATGGAAGGTTATAACGGTTGTGTTCAGATTCTAGCTCGCGTTTTGAGGAACGGAAGCTCCAGGGGGATTCAGTATGCGCTTTTCGCACTTACTTCACTTTGCTTGTATAGCCAGGAAATGATGCTGTTAGCTCTTGAAGAAGGTGTTCTTGAAGCTTCTATTGTGTTCGTGGAAGATGATAATGAGAAGGTAAGGAGGAATGCGTGTAATTTGATTCGGGCTCTCCGTAGCAACAACAGCAACCACGATCGGGTGGAGTGA 1107 0.5619 MATHHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGYRTCPITKLPLPDQPSLIPNHALRSLISNYTLLPPLHQTISQPQTLISTLTSPSSSSDSKIDSLRHLTRLSKRDSAFRRHLADSAAVPAVLAAVVDPALQEKALPLLLNLTLDDDSKVGLVAEGVVGRLVAVLLNASPDCRAVAATIVTSLSVVEVNKATIGAFPAAIAALVAILRDGKGRERKEAATALYALCSFPDNRRRAVSCGAVPILLRNVEIGLERCVEVIGVLAKCKEGREQMEGYNGCVQILARVLRNGSSRGIQYALFALTSLCLYSQEMMLLALEEGVLEASIVFVEDDNEKVRRNACNLIRALRSNNSNHDRVE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6039g00002 368 SUPERFAMILY RING/U-box 5 74 - -
Vium6039g00002 368 Pfam U-box domain 7 73 IPR003613 GO:0004842|GO:0016567
Vium6039g00002 368 Gene3D - 81 208 IPR011989 -
Vium6039g00002 368 FunFam RING-type E3 ubiquitin transferase 5 76 - -
Vium6039g00002 368 FunFam RING-type E3 ubiquitin transferase 70 261 - -
Vium6039g00002 368 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Vium6039g00002 368 PANTHER U BOX DOMAIN-CONTAINING 7 355 - -
Vium6039g00002 368 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Vium6039g00002 368 SUPERFAMILY ARM repeat 87 364 IPR016024 -
Vium6039g00002 368 Gene3D - 209 367 IPR011989 -
Vium6039g00002 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 75 IPR013083 -
Vium6039g00002 368 CDD RING-Ubox_PUB 7 57 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6039g00002 Vium-Chr6039 30351 32009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6039g00002 6 357 U-box Gene Family AT4G21350 59.229 1.10e-139 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6039g00002 - - gmx:100785141 560.066