Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6037g00001 ATGGGCCATGTGGATGAGATTGTTAATGATCCTGACTACAAATTTGAGTTCCCCACTCCGGATGATAGACCTGGTCCACCGATTATAAGTTTCAGTGATGCTTCATTTGGTTATTCTGGGGGCCCCATTCTTTTTAAGAATTTGAACTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCAAATGGTATTGGCAAATCAACTATACTTAAGTTAATTGCTGGGGAACTTCAGCCCAGTTCAGGGACTGTCTTCCGTTCTGCTAAGGTTCGTATAGCAGTGTTCAGTCAGCACCATGTTGATGGTCTGGACTTATCCTCAAATCCTCTACTGTATATGATGCGCTGCTATCCTGGAGTTCCAGAACAGAAGCTTCGAGCTCACTTAGGTTCTTTTGGTGTAACTGGAAATCTTGCACTGCAGCCAATGTATACTTTGTCAGGTGGTCAGAAAAGCAGGGTTGCCTTTGCAAAGATAACTTTTAAGAAGCCACACATAATATTGCTTGATGAGCCTTCCAATCATCTGGATTTGGATGCTGTAGAGGCGCTTATCCAAGGTCTTGTCCTGTTCCAAGGAGGCATTCTAATGGTGAGTCACGATGAACACCTTATCTCGGGAAGCGTGGAGGAACTATGGGTTGTATCCGAAGGAAGAGTGACACCATTCAATGGCACCTTCCAAGATTATAAGAAGATACTCCAATCAGCCTAG 720 0.4403 MGHVDEIVNDPDYKFEFPTPDDRPGPPIISFSDASFGYSGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGRVTPFNGTFQDYKKILQSA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6037g00001 239 Gene3D - 7 239 IPR027417 -
Vium6037g00001 239 CDD ABCF_EF-3 29 221 - -
Vium6037g00001 239 Pfam ABC transporter 46 176 IPR003439 GO:0005524
Vium6037g00001 239 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 3 238 - -
Vium6037g00001 239 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 29 239 IPR003439 GO:0005524
Vium6037g00001 239 ProSitePatterns ABC transporters family signature. 148 162 IPR017871 GO:0005524|GO:0016887
Vium6037g00001 239 FunFam ATP-binding cassette sub-family F member 3 1 239 - -
Vium6037g00001 239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 232 IPR027417 -
Vium6037g00001 239 SMART AAA_5 54 221 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6037g00001 Vium-Chr6037 2712 10668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6037g00001 28 239 Calmodulin-binding Proteins AT2G36910 27.016 1.04e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6037g00001 K06158 - vum:124842283 482.641