Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6036g00016 ATGGATGAGAGAATTTGTATATCTGAGGAAGAAAAGAGTGAAAGTAGCAGACCCTCTTCTGCAAGTCTTAGAAGAAAACGTTCATTCTTCGATTTGAATGAAGAAGCTGTGGATGATGGAGATGGTAGCACCAGTGATGATCCCATCAGTAACAATGAGATATCATCTCAAGAGGGTAATTTGAGTAGTAACAATAACTCAAGTGATGAAGGGAAAGAGCGTGGAACTGCTGTTAGGCAATATGTTCGGTCCAAAATGCCAAGACTCCGTTGGACCCCTGATCTTCATTTAGCTTTTGTGCATGCTGTCGACAGGCTTGGTGGACAAGAAAGAGCAACCCCCAAGTTGGTTCTCCAGTTGATGAATGTGAGAGGACTTAGCATTGCACATGTAAAGAGCCATTTACAGATGTATCGAAGTAAAAAGCTTGATGAGTCTGGCCAAGTTTTGTCTCAGAATAGGGCAATGCAGGGAAGGCACAGTATTTTCGATATGTATGGAAGACTCAATGCCCCACGACACTTTGTGGTTGATAACAGAAATTATGTTCCATCATCTCTGCTCATGGAACAATCACCTTATCAGATCAGTGCTCACTCTTCAAGATTACACCCGACAGGGTTTTTCAATAGTCACCACATGATGATAAGATCTAGTTCAGTGTGGGACAAAGATCTGCGTAATTATCAGTATCAGCGTAGTTCTTGCAGTCCTAACTTCACTGGCCACGCCAAGTTTGATGCCGAGGTTGGTGATGTGAAAAATGGAATGCCAGAATTCCTTAATCAGGTTCAAGTAAGGAAGCAAGGTGAAATGAAAGATGAATATGAGAAGAAAGGGACTATGAGTTTTTTGGAGGTGAAAGATTCAAGAAAAAATAAGAAAGATGATGCAGAAAGTGAAGAAGAAATTAATACGAGACTGTCTCTTTCACTGTTCACTTCATCATCCTCAAATTCATCACAACAAGCACAGTGTAGTGAAAATCATAAAGACGATACTCATGTTGAGAGTTTTTGTTTACAAAATTATGCAGCGAGGAGTCGTTTGGGCTGA 1056 0.4072 MDERICISEEEKSESSRPSSASLRRKRSFFDLNEEAVDDGDGSTSDDPISNNEISSQEGNLSSNNNSSDEGKERGTAVRQYVRSKMPRLRWTPDLHLAFVHAVDRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQNRAMQGRHSIFDMYGRLNAPRHFVVDNRNYVPSSLLMEQSPYQISAHSSRLHPTGFFNSHHMMIRSSSVWDKDLRNYQYQRSSCSPNFTGHAKFDAEVGDVKNGMPEFLNQVQVRKQGEMKDEYEKKGTMSFLEVKDSRKNKKDDAESEEEINTRLSLSLFTSSSSNSSQQAQCSENHKDDTHVESFCLQNYAARSRLG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6036g00016 351 MobiDBLite consensus disorder prediction 1 21 - -
Vium6036g00016 351 MobiDBLite consensus disorder prediction 313 327 - -
Vium6036g00016 351 NCBIfam myb-like DNA-binding domain, SHAQKYF class 87 142 IPR006447 GO:0003677
Vium6036g00016 351 SUPERFAMILY Homeodomain-like 85 141 IPR009057 -
Vium6036g00016 351 MobiDBLite consensus disorder prediction 313 333 - -
Vium6036g00016 351 MobiDBLite consensus disorder prediction 44 71 - -
Vium6036g00016 351 Pfam Myb-like DNA-binding domain 89 139 IPR001005 -
Vium6036g00016 351 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 64 273 IPR046955 GO:0003700
Vium6036g00016 351 MobiDBLite consensus disorder prediction 1 76 - -
Vium6036g00016 351 Gene3D - 86 143 - -
Vium6036g00016 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 143 IPR017930 -
Vium6036g00016 351 FunFam Myb family transcription factor 85 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6036g00016 Vium-Chr6036 105701 109914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6036g00016 78 209 G2-like Transcription Factor Family AT2G42660 50.355 8.17e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium6036g00016 Myb_DNA-binding 1.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6036g00016 - - vun:114183967 591.652