Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6036g00006 ATGGACGAAGATTATGACTACAGAAGGAAGGCCAAGATTGCTCTCATCGCCATTTTGGTCTTAGCTTCCCTCGCCGTCTTTGCCTTGTTCGTTGCCTTTACTTACTACTGCTACATCCTCAACAAGGTCTCCAACCGACGCAAAAGCCTCAAAAAAGTTGAAGACGCAAACCTTAATGAGAATAGTGACTTTGCAAATCTGCAAGTTATTGCCGAGAAAGGACTTCAGGTGTTCACTTTCAAGCAGCTGCATTCTGCAACAGGGGGCTTCAGCAAGTCGAATGTCATTGGTCATGGTGGATTTGGACTTGTTTACCGGGGAGTGCTCAATAATGGCAGGAAAGTTGCCATTAAATTCATGGATCAGGCAGGAAAGCAGGGGGAAGAAGAATTTAAAGTAGAGGTGGAATTGCTAAGCCGGTTGCATTCACCATATCTACTGGCATTGCTTGGGTACTGCTCTGATAGTAATCATAAATTGCTGGTGTATGAATTTATGGCCAATGGTGGACTGCAGGAACATCTTTATCCTGTTAACAATTCTATTATTACACCCATAAAGTTGGATTGGGAAACTCGATTAAGAATAGCACTTGAAGCTGCTAGGGGGTTAGAATATCTTCATGAGCATGTCAGTCCCCCAGTTATTCACAGAGATTTTAAGAGCAGTAACATCCTCTTGGATAAGAAATTTCATGCCAAAGTTTCTGATTTTGGATTGGCAAAGCTGGGACCTGATAGAGCTGGTGGACATGTTTCAACTCGAGTTTTGGGCACCCAAGGATATGTTGCTCCCGAATATGCACTAACAGGGCATTTAACCACAAAATCAGATGTGTACAGTTATGGTGTTGTACTTTTGGAGCTGCTCACTGGCCGAGTGCCAGTAGATATGAAGAGACCTCCCGGAGAAGGTGTTCTTGTTTCTTGGGCTCTGCCTCTTTTGACCGATAGGGAAAAGGTTGTAAAGATTATGGATCCTTCATTGGAGGGACAGTACTCTATGAAAGAGGTTGTCCAGGTGGCTGCAATTGCTGCAATGTGTGTGCAACCCGAGGCAGACTATCGTCCTCTCATGGCAGATGTTGTGCAGTCATTGGTTCCACTGGTTAAGACTCAAAGGTCCCCTTCAAAGGTGGGAAGCTGCTCTAGTTTCCACTCTCCCAAGTTGTCCCCCGGCCCAACATCTACTTAG 1194 0.4497 MDEDYDYRRKAKIALIAILVLASLAVFALFVAFTYYCYILNKVSNRRKSLKKVEDANLNENSDFANLQVIAEKGLQVFTFKQLHSATGGFSKSNVIGHGGFGLVYRGVLNNGRKVAIKFMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDSNHKLLVYEFMANGGLQEHLYPVNNSIITPIKLDWETRLRIALEAARGLEYLHEHVSPPVIHRDFKSSNILLDKKFHAKVSDFGLAKLGPDRAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVSWALPLLTDREKVVKIMDPSLEGQYSMKEVVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTQRSPSKVGSCSSFHSPKLSPGPTST 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6036g00006 397 Gene3D Transferase(Phosphotransferase) domain 1 166 382 - -
Vium6036g00006 397 Gene3D Phosphorylase Kinase; domain 1 50 165 - -
Vium6036g00006 397 PANTHER OS07G0668900 PROTEIN 61 375 - -
Vium6036g00006 397 FunFam Serine/threonine-protein kinase PBS1 57 165 - -
Vium6036g00006 397 MobiDBLite consensus disorder prediction 375 397 - -
Vium6036g00006 397 SUPERFAMILY Protein kinase-like (PK-like) 72 366 IPR011009 -
Vium6036g00006 397 Pfam Protein kinase domain 91 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6036g00006 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Vium6036g00006 397 ProSiteProfiles Protein kinase domain profile. 90 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6036g00006 397 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Vium6036g00006 397 FunFam Receptor-like serine/threonine-protein kinase ALE2 166 383 - -
Vium6036g00006 397 CDD STKc_IRAK 96 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6036g00006 Vium-Chr6036 29866 34408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6036g00006 1 392 Receptor kinase-like Gene Family AT3G58690 77.296 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium6036g00006 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6036g00006 - - gmx:100804893 734.561