Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6036g00003 ATGCTTAAGATTTNCTCCTGCTGTCCGCACCGCCGCTCCTGGGATTTTGCTCCAGCGCCCACCGCTCCTGCAGTCCGCACCGCCAGCACCACCGCACGGTCAGCTACCCTTCTCTCTCTCTTCACCGCCGTGCAACAGGGTGACCTCCAAATTGTCACCACACTCTTAGAGGCCGACCCCTCTCTCTTCCACCAAACCACTCTCTACGATCGCCACTCTCCGCTTCATATTGCCGCAGCCAATGCCCAGATCGAGATTCTCTCTAGGCTTTTGGATGGATCTCTCAACCCAGATGTTTTGAATCGCCACAAACAGACTCCGCTTATGTTGGCAGCAAGGCACGGGAACATCGCGTGTGTCGAGAAGCTTCTTCAAGCCGGAGCTAATGTAATGTTTCGATTTCATTGA 408 0.5441 MLKIXSCCPHRRSWDFAPAPTAPAVRTASTTARSATLLSLFTAVQQGDLQIVTTLLEADPSLFHQTTLYDRHSPLHIAAANAQIEILSRLLDGSLNPDVLNRHKQTPLMLAARHGNIACVEKLLQAGANVMFRFH 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6036g00003 135 SMART ANK_2a 103 132 IPR002110 GO:0005515
Vium6036g00003 135 SMART ANK_2a 70 99 IPR002110 GO:0005515
Vium6036g00003 135 SMART ANK_2a 35 64 IPR002110 GO:0005515
Vium6036g00003 135 ProSiteProfiles Ankyrin repeat region circular profile. 70 102 - -
Vium6036g00003 135 ProSiteProfiles Ankyrin repeat profile. 103 130 IPR002110 GO:0005515
Vium6036g00003 135 ProSiteProfiles Ankyrin repeat region circular profile. 103 130 - -
Vium6036g00003 135 Gene3D - 29 134 IPR036770 -
Vium6036g00003 135 PANTHER ROLLING PEBBLES, ISOFORM B 30 128 - -
Vium6036g00003 135 Pfam Ankyrin repeats (3 copies) 40 130 IPR002110 GO:0005515
Vium6036g00003 135 ProSiteProfiles Ankyrin repeat profile. 70 102 IPR002110 GO:0005515
Vium6036g00003 135 SUPERFAMILY Ankyrin repeat 39 131 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6036g00003 Vium-Chr6036 7359 7949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6036g00003 18 108 MAP Kinase Kinase Kinase AT1G14000 30.769 1.44e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6036g00003 - - vum:124842273 236.498