LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6036g00002	ATGTCTGCTCCCGTCGCAGAGGGTAATGAGGCACATGGACTCACTGGTCACATAATATCAACCACAATTGGTGGCAAAAATGGTGAACCTAAACGAACTATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGAATTGTTTTTCAGGCAAAGTGCTTGGAGACCGGGGAGGCAGTGGCCATAAAGAAGGTCTTGCAGGACAGGCGATACAAAAATCGGGAACTGCAGTTAATGCGCATGATGGATCACCCAAATGTAGTTTCCCTGAGGCACTGTTTCTTCTCTACAACAAGTCGAGATGAACTTTTTCTGAACTTGGTGATGGAATATGTCCCTGAGACGATCTTCCGTGTTATAAAGCACTACAGTAGTATAAACCAGAGAATTCCCCTGATCTATGTGAAATTATATACATATCAAATCTTTAGGGGACTGGCATATATCCACACCGTACCAGGAGTCTGCCACAGGGATGTAAAGCCTCAAAACCTTTTGGTGGATCCAGTCACACATCAAGTCAAGCTTTGCGATTTTGGGAGTGCAAAAGTTCTGGTGAAGGGTGAATCAAACATCTCATACATATGTTCACGGTACTATCGTGCCCCAGAACTAATATTTGGTGCGACAGAGTACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCTGAACTTCTCCTGGGTCAGCCTTTGTTCCCGGGAGAAAATCAGGTCGACCAACTTGTTGAAATTATCAAGGTTCTTGGCACTCCTACTCGAGAAGAAATTCGATGCATGAACCCTAATTATACAGATTTCAGATTCCCCCATATCAAAGCTCATCCTTGGCACAAGGTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCAAAACTTCGTTACAGTGCAGTGGAAGCATTGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCTCGGCTACCAAATGGTCGTTCACTGCCTCCACTTTTTAACTTCAAACAGGAATTAGATGGAGCTCCTCCTGAACTGCTTCCTAAGCTCATCCCGGAGCATGCCAGACGGCAAATCGGTTTTGGCTTGCCGGACACCCAAACTCAAATGTAA	1134	0.4524	MSAPVAEGNEAHGLTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRMMDHPNVVSLRHCFFSTTSRDELFLNLVMEYVPETIFRVIKHYSSINQRIPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPVTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPHIKAHPWHKVFHKRMPPEAIDLASRLLQYSPKLRYSAVEALAHPFFDELREPNARLPNGRSLPPLFNFKQELDGAPPELLPKLIPEHARRQIGFGLPDTQTQM	377

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium6036g00002	377	FunFam	Shaggy-related protein kinase kappa	116	363	-	-
	Vium6036g00002	377	Pfam	Protein kinase domain	36	320	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium6036g00002	377	SUPERFAMILY	Protein kinase-like (PK-like)	35	343	IPR011009	-
	Vium6036g00002	377	Gene3D	Transferase(Phosphotransferase) domain 1	116	363	-	-
	Vium6036g00002	377	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	157	169	IPR008271	GO:0004672\|GO:0006468
	Vium6036g00002	377	Gene3D	Phosphorylase Kinase; domain 1	21	115	-	-
	Vium6036g00002	377	ProSiteProfiles	Protein kinase domain profile.	36	320	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium6036g00002	377	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	13	365	-	-
	Vium6036g00002	377	ProSitePatterns	Protein kinases ATP-binding region signature.	42	66	IPR017441	GO:0005524
	Vium6036g00002	377	SMART	serkin_6	36	320	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium6036g00002	377	CDD	STKc_GSK3	31	323	IPR039192	-
	Vium6036g00002	377	FunFam	Glycogen synthase kinase-3 beta	20	115	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6036g00002	Vium-Chr6036	7	4459	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium6036g00002	40	350	MAP Kinase Gene Family	AT3G59790	36.503	1.19e-58	193

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Vium6036g00002		Pkinase	2.9e-64	CL0016