Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6034g00004 ATGGGTGAGAGAAGACACAATTTTGCAGTAACAATGGTGGTTCTTAGTATGTTGGTGGTTTCAACAGAAATGGTTTATGGAAAGCTGTTTTATGTTGGGAAAAAAGATGGAACATGCTTACAAGACGTATGTTGGGCCAATGGAATCAGTGATTGGCCTAAAAACAAGACCATTAAATCTGGAGATATTCTAGTATTCAATTACGATCTTTTTACGCGTGATGTTACTCTTGTGGACGAGGAAGGATACAGAACATGTAATCCTGGAAAAAATCCAATAGTGTATCGGACAGGACATGATTATATTCAAGTTCCAGAAGGACCAAGTTACTACATTTGTAGTATCAATCGTCTCTGCCAAAAAGGAACCAAAGTTGCGATCATTCCAGCATAA 393 0.3791 MGERRHNFAVTMVVLSMLVVSTEMVYGKLFYVGKKDGTCLQDVCWANGISDWPKNKTIKSGDILVFNYDLFTRDVTLVDEEGYRTCNPGKNPIVYRTGHDYIQVPEGPSYYICSINRLCQKGTKVAIIPA 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6034g00004 130 Pfam Plastocyanin-like domain 50 122 IPR003245 GO:0009055
Vium6034g00004 130 SUPERFAMILY Cupredoxins 30 128 IPR008972 -
Vium6034g00004 130 ProSiteProfiles Phytocyanin domain profile. 28 130 IPR003245 GO:0009055
Vium6034g00004 130 Gene3D - 40 128 IPR008972 -
Vium6034g00004 130 PANTHER BLUE COPPER PROTEIN 29 127 IPR039391 GO:0009055
Vium6034g00004 130 CDD Plantacyanin 22 129 IPR041844 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6034g00004 Vium-Chr6034 14578 15055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6034g00004 52 127 Phytocyanin Superfamily AT1G17800 37.662 2.13e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6034g00004 - - pvu:PHAVU_004G014900g 207.994