Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6034g00003 ATGGGTGAGGGAAGAAACATTGTTGCAGTGATGGTCGTTTTAGGTATGTTGCTGGTTTTGTCTGATTTGGTTGATGCAAGAACCTATGTGGTTGGGAAAAAAGATGGTTCATGCTCAGAGGATATATGTTGGACCTTTAATGTTACTGATTGGCCTAAGGACAAGAACATTGCTTCTGGTGATGTGCTCGTTTTCAATTACAATCCTTCTGTGCACAACGTGGTGTTTGTGGACGAGATAGGATACAAAACATGCACAGTTCCAAAAGATCCAAGATATTCGAGAGTGTATAGAACAGGACATGATCATATTCAACTTCCTGATTTCGGACCCATTCATTTCATTTCAAGTGTCAAAGATGATTGTAAAAGAGGAATCAAAATTGAAATCCGATGA 396 0.3914 MGEGRNIVAVMVVLGMLLVLSDLVDARTYVVGKKDGSCSEDICWTFNVTDWPKDKNIASGDVLVFNYNPSVHNVVFVDEIGYKTCTVPKDPRYSRVYRTGHDHIQLPDFGPIHFISSVKDDCKRGIKIEIR 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6034g00003 131 Pfam Plastocyanin-like domain 44 125 IPR003245 GO:0009055
Vium6034g00003 131 Gene3D - 38 131 IPR008972 -
Vium6034g00003 131 SUPERFAMILY Cupredoxins 26 130 IPR008972 -
Vium6034g00003 131 ProSiteProfiles Phytocyanin domain profile. 27 131 IPR003245 GO:0009055
Vium6034g00003 131 PANTHER BLUE COPPER PROTEIN 20 130 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6034g00003 Vium-Chr6034 11265 12415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6034g00003 7 131 Phytocyanin Superfamily AT1G17800 31.538 6.46e-11 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6034g00003 - - var:108345371 251.136