Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6019g00002 ATGGATACTACTCTTTTCTCCATGAACAAACCAACCTTCAAAATTCGCTTTTTCTTATTCTTATGCTTCTTCATTGGGATAGTTTCATCCCAATTGTCCTCTGATTTTTACTCCACAACCTGTCCTAATGCACTTTCAACCATTAAGAGTGGAGTTGATTCTGCTGTGAGCAATGAAGCTCGTATGGGGGCATCCCTCCTACGTCTCCATTTCCATGATTGCTTTGTTCAAGGATGTGATGCATCAGTGCTATTAAACGATACATCAAGTTTCACAGGTGAACAATCAGCAAGAGGGAACGTGAATTCCATAAGGGGTTTTGGTGTAATAGACAGCATTAAGTCTGAGTTAGAAAGCTTGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTCGCTGTAGCAGCAAGAGACTCAGTCGTTGCTCTTGGTGGACAAAGTTGGACAGTGCAACTGGGCAGAAGAGACTCAACCACAGCAAATTTAGATGCTGCAAACTCAGACTTACCTGGTTTTACTTTCAGTCTACAGCAACTTATCGATTCTTTCTCAAAAAAAGATTTCACCACAGAAGAAATGGTTACCCTGTCAGGAGGGCACACAATTGGGCAAGCTAGTTGTTCAACTTTCAGAACAAGGATTTACAACGACACCAACATAGATTCATCGTATGCAACATCGTTGCAAGCAAATTGTCCTAGCGTAGGTGGTGACCGAAATTTGGCTCCTCTTGACAGCTCCCCGACCACCTTTGACAATGCTTACTTCCAGGATCTGCAGAGCCAAAAGGGTCTCTTGCACTCAGATCAAGAGCTTTTCAATGGAGGATCCACTGATTCTCAAGTAAATGGTTATGTCAGCAACCCTTCAAGTTTTCAAACTGATTTTGCCAATGCAATGGTGAAAATGGGGAACCTTGGCCCACTGCTCACTGGGTCAAGTGGCGAAATCAGGACCAACTGCTGGAAGACCAATTAA 975 0.4328 MDTTLFSMNKPTFKIRFFLFLCFFIGIVSSQLSSDFYSTTCPNALSTIKSGVDSAVSNEARMGASLLRLHFHDCFVQGCDASVLLNDTSSFTGEQSARGNVNSIRGFGVIDSIKSELESLCPGVVSCADILAVAARDSVVALGGQSWTVQLGRRDSTTANLDAANSDLPGFTFSLQQLIDSFSKKDFTTEEMVTLSGGHTIGQASCSTFRTRIYNDTNIDSSYATSLQANCPSVGGDRNLAPLDSSPTTFDNAYFQDLQSQKGLLHSDQELFNGGSTDSQVNGYVSNPSSFQTDFANAMVKMGNLGPLLTGSSGEIRTNCWKTN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6019g00002 324 SUPERFAMILY Heme-dependent peroxidases 31 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 PANTHER PEROXIDASE 72-RELATED 24 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 Gene3D Peroxidase, domain 2 169 302 - -
Vium6019g00002 324 Gene3D - 35 320 - -
Vium6019g00002 324 FunFam Peroxidase 169 302 - -
Vium6019g00002 324 CDD secretory_peroxidase 31 323 IPR033905 GO:0004601|GO:0042744
Vium6019g00002 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Vium6019g00002 324 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 FunFam Peroxidase 35 178 - -
Vium6019g00002 324 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 ProSiteProfiles Plant heme peroxidase family profile. 31 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium6019g00002 324 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
Vium6019g00002 324 Pfam Peroxidase 50 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6019g00002 Vium-Chr6019 13597 15424 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6019g00002 27 324 Peroxidase AT5G05340 64.120 2.89e-138 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6019g00002 K00430 - gmx:100800219 539.265