Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6018g00004 ATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACACCTCACCAGGAAGACCATCAACCTCCACCTTCACTCAACTCAATTATAACTTCATGTGCACCTCAAGAGTACCATGGAGGAGCATCCTTTCTAGGCAAGAGATCTATGTCATTTTCGGGAATTGAACTTGGAGAAGAAGCTAATGCCGAGGAGGACTTATCTGATGACGGATCACAAGCAGGAGAGAAGAAAAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAACCAGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGCTTGCAGCCTAGACAGATTGCTATATGGTTCCAGAACAGGAGAGCTAGGTGGAAGACCAAGCAGTTGGAGAAGGACTACGATCTTCTCAAAAGACAATATGAAGCTATCAAGGCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACCGAGATATTGGCACTGAAAAGCAGAGAACCAACCGAATCCATCAACCTCAATAAAGAAACTGAGGGCTCCAGCAGCAATAGAAGTGAGAACAGCTCAGAAATCAAGTTGGATATCTCAAGAACCCCAGCTATTGACAGTCCTCTATCCACTCAGCAGAACAGCAGAAACCTCTTTCCATCTTCTACTAGACCAACAGGAGTTGCTCAGCTTTTCCAAACCGCTTCAAGGCCAGAACTTCAGTGCCAAAAGATTGATCATATGGTCAAAGAAGAGAGCTTAAGCAACATGTTCTGTGGCATTGATGATCAATCTGGTCTTTGGCCTTGGTTGGAGCAGCAGCATTTCAATTGA 837 0.4468 MAFFPANFMLQTPHQEDHQPPPSLNSIITSCAPQEYHGGASFLGKRSMSFSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSEIKLDISRTPAIDSPLSTQQNSRNLFPSSTRPTGVAQLFQTASRPELQCQKIDHMVKEESLSNMFCGIDDQSGLWPWLEQQHFN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6018g00004 278 PRINTS Lambda-repressor HTH signature 101 110 IPR000047 GO:0003677
Vium6018g00004 278 PRINTS Lambda-repressor HTH signature 110 126 IPR000047 GO:0003677
Vium6018g00004 278 Pfam Homeodomain 75 128 IPR001356 GO:0003677
Vium6018g00004 278 Gene3D - 67 136 - -
Vium6018g00004 278 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Vium6018g00004 278 Coils Coil 122 170 - -
Vium6018g00004 278 CDD homeodomain 75 131 IPR001356 GO:0003677
Vium6018g00004 278 MobiDBLite consensus disorder prediction 58 77 - -
Vium6018g00004 278 SUPERFAMILY Homeodomain-like 68 132 IPR009057 -
Vium6018g00004 278 SMART HOX_1 73 134 IPR001356 GO:0003677
Vium6018g00004 278 MobiDBLite consensus disorder prediction 1 26 - -
Vium6018g00004 278 Pfam Homeobox associated leucine zipper 130 170 IPR003106 GO:0006355|GO:0043565
Vium6018g00004 278 MobiDBLite consensus disorder prediction 178 225 - -
Vium6018g00004 278 MobiDBLite consensus disorder prediction 175 225 - -
Vium6018g00004 278 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Vium6018g00004 278 MobiDBLite consensus disorder prediction 12 26 - -
Vium6018g00004 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 47 243 IPR045224 GO:0003700
Vium6018g00004 278 FunFam Homeobox-leucine zipper protein ATHB-13 67 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6018g00004 Vium-Chr6018 117885 120186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6018g00004 1 278 Homeobox Transcription Factor Family AT1G69780 63.051 5.57e-117 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium6018g00004 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6018g00004 K09338 - gmx:100801479 536.184