Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6018g00001 ATGTCTACCAGAAGATCTCGTTCCAGACAAACGCCAGTTTCCACTCAGATCACTGATGCTCAGATCACTGATCTCGTTTCCAAGTTACAGCACCTTATCCCTGAGCTTCGCGCAAGACGTTCCGACAAGGTTTCGGCTTCTAAGGTGTTGCAGGAGACTTGCAACTACATAAAAAGCTTGCACAGAGAGGTTGATGACCTAAGTGACCGGTTGTCACAACTTCTGGCCACCACAGACTCCAACAGTGCCCAAGCAGCCATTATTAGGAGCTTACTTATGTAA 282 0.4752 MSTRRSRSRQTPVSTQITDAQITDLVSKLQHLIPELRARRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6018g00001 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Vium6018g00001 93 Pfam Helix-loop-helix DNA-binding domain 21 61 IPR011598 GO:0046983
Vium6018g00001 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vium6018g00001 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Vium6018g00001 93 FunFam Transcription factor ILI6 7 89 - -
Vium6018g00001 93 Coils Coil 57 77 - -
Vium6018g00001 93 CDD bHLH_AtPRE_like 14 77 - -
Vium6018g00001 93 Gene3D - 19 89 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6018g00001 Vium-Chr6018 47705 49164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6018g00001 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 69.149 2.89e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium6018g00001 HLH 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6018g00001 - - gmx:100791371 165.236