Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6016g00008 ATGTTTAAACGGGCTGCGGTGGCATGGGAACCAGAGAAGCCATTGTCGATAGAGACCATAGAAGTGGCACCACCTGGGAAAGGTGAAGTGCGTTTGAAAATCCTCTTCAACTCCCTTTGCCGTACTGATGTTTACTGGTGGGATGTTAAGGGTCAGAATCCGCTGTTTCCTCGTATTTTAGGTCATGAAGCTTCAGGGATTGTGGAGAGCGTGGGTGAGGGTGTGACCGATCTGAAACCAGGAGATCATGCACTCCCAATATTCACTGGGGAGTGTGGGGAATGCAAATATTGCAAATCGGAAGAGAGCAACCTGTGTGAGCTGCTAAGGATCAACAGTGACAGAGGAGTTATGCTGAGTGATGGCAAAACAAG 374 0.4866 MFKRAAVAWEPEKPLSIETIEVAPPGKGEVRLKILFNSLCRTDVYWWDVKGQNPLFPRILGHEASGIVESVGEGVTDLKPGDHALPIFTGECGECKYCKSEESNLCELLRINSDRGVMLSDGKT 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6016g00008 124 Gene3D - 12 123 - -
Vium6016g00008 124 SUPERFAMILY GroES-like 3 114 IPR011032 -
Vium6016g00008 124 Pfam Alcohol dehydrogenase GroES-like domain 28 109 IPR013154 -
Vium6016g00008 124 PANTHER ALCOHOL DEHYDROGENASE 4 124 - -
Vium6016g00008 124 FunFam alcohol dehydrogenase 1-like isoform X1 11 124 - -
Vium6016g00008 124 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 61 75 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6016g00008 Vium-Chr6016 67116 69718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6016g00008 8 122 Monolignol Biosynthesis Gene Families AT1G72680 31.034 3.06e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6016g00008 K18857 - vum:124842243 261.922