Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6016g00003 ATGCAAGCTGAGGATGGAACTAGCAATGGTGATAAGTGGGCTGTGTTGGGTAGGAGGTCAGACTCTGAAGATAGAGATTACGGGGGTAGAAATCTAGGTAGAAACAATGTTGCTGGAGGTGAAGAAGATCGGGGCTTGAAGGATGAATCTTTAAAGGATGGGGTTGTGGTTGAAGGTGAAGAAGTTCGGGGTTTGAAGAAGGAATCTGTTGATAGTAGGGTGACGAGTAAAGGTGGGAATGGTATTGCTGAAGGTGAAGAAGTGCGGGTCTTGAAGCGTGAAGCTATAAATAATGGGGTGACGCACGAAGGAGGAAATGGTGTTGCAAATAGGAAAGAAGTTTTGGGTTTGAAGAATGGAACTGTAAATACCGGGTTAACAGTTGTGGGGGTCAATGGTGTTGCTGAAGGTGAAGAAAAAGTTCAGGACTTGAGTAATGAAACTGTAAATAATGGAATGGTACTTGAGGTTGGAAATGGTGTTGCTGAAAGCGAAGAGGTTTTGGGCTCAAAGAAGGAAGTTATAAATAATGGAGTGGCAATTGCTGATGGGAATGTTGTTGCTTACAGTGGAGAAGATCTGGGCTCAAAGGATGAAGCTGTAAACAATGAGGTGGCAATTGCAGATGGGAGTGGTGTTACTCCAGTTGAACATGATCGCTTGAAGAATGAAACTGTAGATCATGTAGAAGTACTTACAAATGGATTTGGTGTTGTAGAAGGGAAGTCTGGTGCAGTTGAATGTTTTCGAACATATAAGAGGCGCAAGCATGTAAAATGTGCTTCAGAATTTAAAGTTCAGGAGAACAGCAGAAAGCATTTGGAAGTGGAAACTCTTAAAATTGACAGTAATGGTCAAGAACGCTCTTTGGATTTAGATTGTTTGCTTTACAGATTACAGAGTGAAGCTAATGGGCAAGAAAATGCTGTGCATAATGGATTTTGTACTGAGCCTGATGGCCATGGTGCAACTGAAAGGTGTCAGCGATTGTTCTGCGATATCTTAGCCTCCGAAGAGTTCAGTTCATTATGTAAAGTACTGCTTGAAAATTTCCAAGAAATGAAACCTGAAACTATATTTGACTTTAGCCTGATAAACTCAAGGATGAAGGAACAAGCTTATGAGCAAACACCTACACTTTTCTTATCTGATCTTCAACAGGTTTGGCAGAAGCTTCAAAATACTGGCCATCAGATTGTTGCTATAGCCAGGAGCCTCTCCAACTTGTCAAAAGCTTCCTTCTGTGAGCGGGTTGTGATTTCAACGCCCAGATCCTTCGAAGACGGAAAACAAGTGGAATCAATCTCTCACATGAAGCCGGAGCGGAGAGTAGAATGTGTTACATTAAAAATTGGCAGTTGCAGGCATTGTGGAGACAAAGCAGAAGGTGTAGACTGTTTGGTTTGTGATTCATGTGAAGAGATGTATCATCTGTCTTGTATTGAGCCTGCTGTAGAAGAAATACCCCCTAAAAGCTGGTTCTGTGCCAATTGTACTGCCAGTGGAATTGGATGTCAACATGAGAACTGTGTGGTGTGTGAACGGTTGAATGTCCCAAAGAAACTGGACGACAATGACGTCAAGGAAATCATCCCTACAAAAGAGGAAAAACTGAATGAATTGGAGGAGAATTCAATCTGTACTTGTGATGGGATTCCAGTTTCCGCTGGGCCGAGACATCTATCTGTCTGCAAAATTTGTAAAATAGTGGTGCAGCGTGGAAAAATAAAAATCTGTGGTCACTTATTTTGCCCCAGTAAGTACTACCATGTAAGGTGTTTGTCTAGTAAGCAGCTTAGGACTTACGGTCACTGTTGGTATTGCCCTTCTTGTATATGCCAAGTCTGCTTCACTGACAAAGATGATGATAAGATTGTTCTCTGTGATGGCTGTGATCATGCATACCATATGTACTGTTTGAAACCTCCGCTGAATTTGATTCCTGTGGGGAAATGGTTCTGCATAAAATGTGATGCAGGGATACTAGCAATACGCAAGGCAAGAAAGGCATACGAGAGCAAGAAAGGGAAAATTGGACAGAAGGATTTAAAGCCAAATGAAGACATTGACAAGAAATGGAACAGAAAACGTGAACGGGAATCTGATAAAGTTGGAGGAATGGAGATGCTTATAACTGCAGCAAATACTCTGAATTCTGAAGAGAAAATGAATGCAATCCAGATTGAGTCAGAGAGAACATTAAAATAA 2208 0.4158 MQAEDGTSNGDKWAVLGRRSDSEDRDYGGRNLGRNNVAGGEEDRGLKDESLKDGVVVEGEEVRGLKKESVDSRVTSKGGNGIAEGEEVRVLKREAINNGVTHEGGNGVANRKEVLGLKNGTVNTGLTVVGVNGVAEGEEKVQDLSNETVNNGMVLEVGNGVAESEEVLGSKKEVINNGVAIADGNVVAYSGEDLGSKDEAVNNEVAIADGSGVTPVEHDRLKNETVDHVEVLTNGFGVVEGKSGAVECFRTYKRRKHVKCASEFKVQENSRKHLEVETLKIDSNGQERSLDLDCLLYRLQSEANGQENAVHNGFCTEPDGHGATERCQRLFCDILASEEFSSLCKVLLENFQEMKPETIFDFSLINSRMKEQAYEQTPTLFLSDLQQVWQKLQNTGHQIVAIARSLSNLSKASFCERVVISTPRSFEDGKQVESISHMKPERRVECVTLKIGSCRHCGDKAEGVDCLVCDSCEEMYHLSCIEPAVEEIPPKSWFCANCTASGIGCQHENCVVCERLNVPKKLDDNDVKEIIPTKEEKLNELEENSICTCDGIPVSAGPRHLSVCKICKIVVQRGKIKICGHLFCPSKYYHVRCLSSKQLRTYGHCWYCPSCICQVCFTDKDDDKIVLCDGCDHAYHMYCLKPPLNLIPVGKWFCIKCDAGILAIRKARKAYESKKGKIGQKDLKPNEDIDKKWNRKRERESDKVGGMEMLITAANTLNSEEKMNAIQIESERTLK 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6016g00003 735 MobiDBLite consensus disorder prediction 678 705 - -
Vium6016g00003 735 ProSitePatterns Zinc finger PHD-type signature. 454 498 IPR019786 -
Vium6016g00003 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 555 661 IPR013083 -
Vium6016g00003 735 MobiDBLite consensus disorder prediction 1 52 - -
Vium6016g00003 735 ProSiteProfiles Zinc finger PHD-type profile. 451 501 IPR019787 -
Vium6016g00003 735 Gene3D - 336 501 - -
Vium6016g00003 735 CDD PHD_RSF1 613 657 - -
Vium6016g00003 735 SMART PHD_3 563 612 IPR001965 -
Vium6016g00003 735 SMART PHD_3 453 499 IPR001965 -
Vium6016g00003 735 SMART PHD_3 615 658 IPR001965 -
Vium6016g00003 735 ProSiteProfiles Zinc finger PHD-type profile. 610 660 IPR019787 -
Vium6016g00003 735 FunFam PHD finger protein EHD3 isoform A 345 502 - -
Vium6016g00003 735 ProSitePatterns Zinc finger PHD-type signature. 605 657 IPR019786 -
Vium6016g00003 735 SUPERFAMILY FYVE/PHD zinc finger 612 660 IPR011011 -
Vium6016g00003 735 Pfam PHD-finger 612 658 IPR019787 -
Vium6016g00003 735 Pfam PHD-finger 454 500 IPR019787 -
Vium6016g00003 735 MobiDBLite consensus disorder prediction 16 30 - -
Vium6016g00003 735 SUPERFAMILY FYVE/PHD zinc finger 433 499 IPR011011 -
Vium6016g00003 735 PANTHER OS02G0192300 PROTEIN 372 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6016g00003 Vium-Chr6016 20752 32757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6016g00003 612 675 C2H2 Transcription Factor Family AT3G01460 53.125 1.30e-15 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium6016g00003 PHD 1.7e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6016g00003 - - vun:114195482 1332.39