Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6012g00006 ATGGCCGTTCCCGCGACGGTCGCCGCCACGCAGGCTTCACTTTACGTTGGAGATCTTCACCCTGACGTCACCGACACCCAACTATTCCAAGCCTTCCGGGAATTCGAAAGCCTCTCTTCTGTTCGCGTCTGCAGGGATTCCATGACGAGGACGTCGCTCCGTTACGGTTACGTCAACTTTATGTCTCAGCAAGACGCAATTCGAGCTATCAAGGTTAAAAATAATTCTTATCTCTTTGGAAAAGTGATGAGGGTCATGTGGTCACATCGCGATCCTAATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTGGCAGAATCAATAGATAATGCGGTGCTACATGATTTATTTCAAAAATATGGGAATGTTTTGTCCAGCAAAGTAGTCGTGTATGACGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATAGTGCCATTGAGAACCTGAATGGCTCTACTGTGAGAGACAAGCAGATATATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCATTGTGCCTGGTAATGATTCCAAGTATACAAATTTGTACATTAAAAACTTGGATTCGGATATTACGGAAGCACTTCTTCAGGAAAAGTTCTCCACTTTTGGAAAAATTATTAGCTTGGCTATTGCAAAGGATGACAATGGGCTATCCAAGGGTTTTGCATTTGTTAACTATGATAGACCAGATGATGCTAGAAAGGCGATGGAAGCAATGAATGGATCGCAATTTGGTTCAAAGAATCTTTATGTTGCTAGGGCACAGAAGAAGGCTGAACGTGAGCAGATCTTGCATAATCAATTTGAGGAAAAACGCAAGGAGCAAATACTGAAATCAAAGGGCTCTAACCTTTATGTGAAGAACATTGATGACGCTGTTAGTGAAAAAGAACTACGAAATCTGTTTAGTTCATGTGGCAGAATAACTTCTGTAAAAGTTATGCGAAGTGAAAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCAACCCTGAGGAGGCTAATAAAGCTGTGAGCACTTTTTATGGATGCATGTTCCATGGTAAGCCACTGTATATTGCTTTCGCTCAGAGGAAAGAGGATAGGAAAACACAGTTGAAGCTCCACTATGCACCACAACAAGCACGATTGAACGGATCTTCTGCTGCAGTTATCCCTGGTGGCTTTTCATCTTACTTCTATCCAAATGTTACTTCACATATGCTTCAATCTGGGCTTTTGTATCAACCTCTGGGATTGGGACCAGGATGGAGGACTAATGACTTTACGCTTCCTACTAGATCATTTCAACAATCACAGGTTCCTATTGTTCCTAGCACTAATAGGAATCATAGGCTAAATAGGGGAAGAATGAATGGGCATACAAATTCAGTGGGAAAAGCTCACTCTGGTGTATATATCCCGCAACTGCAACACTATTATCAGGCGATGGACTCAAGAGAGTACCTGACAGCTTAG 1497 0.4255 MAVPATVAATQASLYVGDLHPDVTDTQLFQAFREFESLSSVRVCRDSMTRTSLRYGYVNFMSQQDAIRAIKVKNNSYLFGKVMRVMWSHRDPNARKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIENLNGSTVRDKQIYVGKFVRKGDRIVPGNDSKYTNLYIKNLDSDITEALLQEKFSTFGKIISLAIAKDDNGLSKGFAFVNYDRPDDARKAMEAMNGSQFGSKNLYVARAQKKAEREQILHNQFEEKRKEQILKSKGSNLYVKNIDDAVSEKELRNLFSSCGRITSVKVMRSEKGISKGFGFVCFSNPEEANKAVSTFYGCMFHGKPLYIAFAQRKEDRKTQLKLHYAPQQARLNGSSAAVIPGGFSSYFYPNVTSHMLQSGLLYQPLGLGPGWRTNDFTLPTRSFQQSQVPIVPSTNRNHRLNRGRMNGHTNSVGKAHSGVYIPQLQHYYQAMDSREYLTA 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6012g00006 498 SMART rrm2_1 295 367 IPR003954 GO:0003676
Vium6012g00006 498 SMART rrm2_1 101 173 IPR003954 GO:0003676
Vium6012g00006 498 SMART rrm2_1 192 264 IPR003954 GO:0003676
Vium6012g00006 498 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 402 IPR006515 GO:0003723
Vium6012g00006 498 Gene3D - 5 100 IPR012677 -
Vium6012g00006 498 Gene3D - 275 394 IPR012677 -
Vium6012g00006 498 Coils Coil 263 283 - -
Vium6012g00006 498 SMART rrm1_1 13 86 IPR000504 GO:0003723
Vium6012g00006 498 SMART rrm1_1 101 173 IPR000504 GO:0003723
Vium6012g00006 498 SMART rrm1_1 192 264 IPR000504 GO:0003723
Vium6012g00006 498 SMART rrm1_1 295 367 IPR000504 GO:0003723
Vium6012g00006 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Vium6012g00006 498 CDD RRM4_I_PABPs 293 371 - -
Vium6012g00006 498 SUPERFAMILY RNA-binding domain, RBD 291 382 IPR035979 GO:0003676
Vium6012g00006 498 Gene3D - 101 180 IPR012677 -
Vium6012g00006 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Vium6012g00006 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Vium6012g00006 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Vium6012g00006 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Vium6012g00006 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Vium6012g00006 498 FunFam Polyadenylate-binding protein 277 385 - -
Vium6012g00006 498 PANTHER RNA BINDING PROTEIN 12 77 - -
Vium6012g00006 498 FunFam Polyadenylate-binding protein 101 181 - -
Vium6012g00006 498 FunFam Polyadenylate-binding protein 182 276 - -
Vium6012g00006 498 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Vium6012g00006 498 SUPERFAMILY RNA-binding domain, RBD 181 274 IPR035979 GO:0003676
Vium6012g00006 498 Gene3D - 181 274 IPR012677 -
Vium6012g00006 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Vium6012g00006 498 FunFam Polyadenylate-binding protein 4 99 - -
Vium6012g00006 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6012g00006 Vium-Chr6012 85531 90022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6012g00006 12 495 Eukaryotic Initiation Factors Gene Family AT2G36660 54.268 0.0 526