Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium600g00010 ATGAATTCAGAGAAGCCAGTCAGCCCTGAGAATTTAAGTGATGAAAATGATCAAGAAGAAGCACAAGATGACACTGGTGGAACTAAACGCTCTTATGAGTGCACATTCTGCAAAAGAGGTTTCACAAACGCTCAGGCTTTGGGGGGTCATATGAATATCCATAGGAAAGACAGGGCCAAGGCCAAGCAATTCACACTCGACGCTTCACCTTCAATTAACAAATTCAACAGTCATGAATCCATAGTCTTTCCTTTTGTCTCAGAAACTTTGAACCAACAACACGCAAGGCCTAATTACTCCGTTTTGGAGTCTCAGAGGAACTGTGACAAACACTTTCATCCCCCAGCTCCTGCAAGTGCCTTTTATTATGAGTTTTATGAGTCAAGGTCTCGGTCTTTGAGTTTGAACCAAGAGCTTCGCGGTGCCAACCTGAGTCTCCAAATTGGTCCAAGTCATCATGTGGGTGATGATATTCATCAAGTGAGAGGAAACCAGAAAGATAGTGAAGTGGACTTGGAGCTAAGACTTGGCCATCATCCATACTGA 546 0.4359 MNSEKPVSPENLSDENDQEEAQDDTGGTKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQFTLDASPSINKFNSHESIVFPFVSETLNQQHARPNYSVLESQRNCDKHFHPPAPASAFYYEFYESRSRSLSLNQELRGANLSLQIGPSHHVGDDIHQVRGNQKDSEVDLELRLGHHPY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium600g00010 181 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Vium600g00010 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Vium600g00010 181 MobiDBLite consensus disorder prediction 1 29 - -
Vium600g00010 181 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Vium600g00010 181 Pfam C2H2-type zinc finger 32 56 - -
Vium600g00010 181 PANTHER OS07G0101800 PROTEIN 12 179 - -
Vium600g00010 181 Gene3D Classic Zinc Finger 13 83 - -
Vium600g00010 181 SMART c2h2final6 32 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium600g00010 Vium-Chr600 88358 88903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium600g00010 23 177 C2H2 Transcription Factor Family AT3G09290 36.646 2.56e-18 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium600g00010 zf-C2H2_6 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium600g00010 - - vun:114191365 340.502