Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium600g00007 ATGAGAGCTAAGAGTTTGATAAGTAAAAAGCAGATAAGCCTAAGATTGAGAAAAATGATTAAGTGTATATGCTCCGGGGAGCAGTTAAAGGTGGATGAATTAGGTTACTCATCGGAGTCCTTAGCAACCAGAGATTATTCAGCAAGTGGTGGCTTTTCTCGTCCTGGTGAAAACGACACAAAGATTGACAATACCAACATTGAAGAAGCAGAGTCTTCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCTTTGCTTGGAAGACTTGAGTATCAGAAAGGCAATGTCGAAGCTGCACTTCATGTGTTTGAAGGAATAGATATTGCTACTGTCGTTCCCAAGATTAAAGTTTCTATATCTAGAAGATGTGAGCCTAATAGACGCCGTTCGCAAAGTGATGCTCAGCCTCCTATGTCAATGCATGCTGTTACTTTAATTCTTGAAGCTGTCTTTCTCAAGGCCAAATCGTTGCAGGCTCTAGGAAGGTTTCAAGATGCTGCCCAGTCATGCAAGACGATTTTAGACACTGTTGAATCAGCTTTACCAGAAGGTTGGCCTGAAAACTTAGTTTCGGACTGTAAACTGCAAGAGACAGTGGGAAATGCTGTGGAACTGCTTCCAGAGTTGTGGAAGCTTGCAGGCTCTCCTCAAGACGTTATCTCATCGTTTAGGAGGGCCCTTCTTTATCATTGGAATCTTGGCATTAAAGCCAGCGCAAGAATACAAAAGGAATTTGCTTTTTTTCTTCTGTATAGTGGTTGTGAAGCTAGCCCTCCTGCTCTCCGCTCTCAGTTGGATGGTTCATTTGTGCCAAGAAGCAACTTAGAAGAGGCTGTTCTTCTGCTTCTGATTTTGCTGAGAAAATTTGTTCTTGGATACATTGAATGGGACCCTTCGTTAATTGATCACCTTTCGTTTGCTCTAAGTGTTTCTGGGGAATTCATGACTCTAGCTCAGCAGGTTGAGGAATTGCTTCCTGAAAACATGGACAGAAAAGAAAGATTCTATACTCTAGCTCTTTGTTACTGTGGAGAAGGTGAACATACGACTGCTTTGGATCTTCTAAGGAACTCTCTGAATCACAGAGAGAACTCAGACTGCATAAAGGAGCTACTTCTAGCTTCAAAAGTTTGTGCAGACAAGAAGATTTACACTGAAGAAGGAATCAGATATTCTTTCAAAGCCATTTCTCAGCTGAATGGAAAGTGCATGCAGATGGCAGCTATTGCAAATTGCTTTCTAGGCGTTCTACTGTCATCAAAATCCAGATCAGCCGCTTCTGAATCAGAGAAGATATTTTTGCAGTCTGAAGCACTCAGTGCTCTAAAGGATTCGGAGAGAACGATGAGGGAGAGCGATCCTTACATTGTCCTTCATCTTTGTCTAGAATATGCTGAACAGAGGAAGTTGAGCACTGCTATTGATCATGCAAAGAAACTGATTAAGCTTGAGGGTGGATCTAGTGTCAGTGCATATATTCTTTTAGCGCGGATTTTATCTGCTCAACGAAAGTTTGAAGATGCAGAGCTGGTTATCGATGCAGCTCTAGATCAAAGTGGGAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAACTAAGGATTGCACAGGGAAAATTAAAGAATGCGGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAGGTCCAAAATAAAAGTTTAGGCACGGCAAGTAAGAAGAGTAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAATGTGTATATGGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTGGCAAAATCTGAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACACAAAGGGTTTACTCTTTGAAGCCAGAGGTCTTCATCCAGAGGCTCTGAAATCATTTAGGAAAGCATTAGATATTGATCCCGACCATGTTCCAAGTTTGATATCTACAGCTTGTGTACTCAGACAACTTGGTGGTCAATCATCTTCAATAGTCAGAAGCCTACTCACTGATGCGTTGCGCCTTGACAGAACAAACCCATCTGCTTGGTACAATCTTGGACTGTTCTACAGAGATGATCTGGGGACATCGGCAATGGAAGCCGTTGAATGCTTTGAAGCTGCAGCTTTTCTTGAAGAATCTTCTCCCATCGAACCCTTTAGATAG 2184 0.4194 MRAKSLISKKQISLRLRKMIKCICSGEQLKVDELGYSSESLATRDYSASGGFSRPGENDTKIDNTNIEEAESSLRESGYLNYEEARALLGRLEYQKGNVEAALHVFEGIDIATVVPKIKVSISRRCEPNRRRSQSDAQPPMSMHAVTLILEAVFLKAKSLQALGRFQDAAQSCKTILDTVESALPEGWPENLVSDCKLQETVGNAVELLPELWKLAGSPQDVISSFRRALLYHWNLGIKASARIQKEFAFFLLYSGCEASPPALRSQLDGSFVPRSNLEEAVLLLLILLRKFVLGYIEWDPSLIDHLSFALSVSGEFMTLAQQVEELLPENMDRKERFYTLALCYCGEGEHTTALDLLRNSLNHRENSDCIKELLLASKVCADKKIYTEEGIRYSFKAISQLNGKCMQMAAIANCFLGVLLSSKSRSAASESEKIFLQSEALSALKDSERTMRESDPYIVLHLCLEYAEQRKLSTAIDHAKKLIKLEGGSSVSAYILLARILSAQRKFEDAELVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTASKKSKGNRDRRLEMEIWHDLANVYMALSQWQDAEVCLAKSEAINPYSASRWHTKGLLFEARGLHPEALKSFRKALDIDPDHVPSLISTACVLRQLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLFYRDDLGTSAMEAVECFEAAAFLEESSPIEPFR 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium600g00007 727 SUPERFAMILY TPR-like 324 551 IPR011990 GO:0005515
Vium600g00007 727 ProSiteProfiles TPR repeat profile. 616 649 IPR019734 GO:0005515
Vium600g00007 727 SUPERFAMILY TPR-like 529 697 IPR011990 GO:0005515
Vium600g00007 727 PANTHER PROTEIN NPG1 20 727 IPR043376 -
Vium600g00007 727 Pfam Tetratricopeptide repeat 587 649 - -
Vium600g00007 727 Pfam Tetratricopeptide repeat 466 521 - -
Vium600g00007 727 Gene3D Tetratricopeptide repeat domain 563 724 IPR011990 GO:0005515
Vium600g00007 727 Gene3D Tetratricopeptide repeat domain 120 562 IPR011990 GO:0005515
Vium600g00007 727 SMART tpr_5 616 649 IPR019734 GO:0005515
Vium600g00007 727 SMART tpr_5 582 615 IPR019734 GO:0005515
Vium600g00007 727 SMART tpr_5 150 183 IPR019734 GO:0005515
Vium600g00007 727 SMART tpr_5 335 368 IPR019734 GO:0005515
Vium600g00007 727 SMART tpr_5 457 490 IPR019734 GO:0005515
Vium600g00007 727 SMART tpr_5 492 525 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium600g00007 Vium-Chr600 32274 36091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium600g00007 16 727 Calmodulin-binding Proteins AT4G28600 53.224 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium600g00007 K21843 - gmx:100789469 1262.28