Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium600g00005 ATGGTCCTAGGAAACCGAGTGGAATGTTTCAGTATGAGAGCTAAGAGTTTGATAAGTAAAAAGCAGATAAGCCTAAGATTGAGAAAAATGATTAAGTGTATATGCTCCGGGGAGCAGTTAAAGGTGGATGAATTAGGTTACTCATCGGAGTCCTTAGCAACCAGAGATTATTCAGCAAGTGGTGGCTTTTCTCGTCCTGGTGAAAACGACACAAAGATTGACAATACCAACATTGAAGAAGCAGAGTCTTCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCTTTGCTTGGAAGACTTGAGTATCAGAAAGGCAATGTCGAAGCTGCACTTCATGTGTTTGAAGGAATAGATATTGCTACTGTCGTTCCCAAGATTAAAGTTTCTATATCTAGAAGATGTGAGCCTAATAGACGCCGTTCGCAAAGTGATGCTCAGCCTCCTATGTCAATGCATGCTGTTACTTTAATTCTTGAAGCTGTCTTTCTCAAGGCCAAATCGTTGCAGGCTCTAGGAAGGTTTCAAGATGCTGCCCAGTCATGCAAGACGATTTTAGACACTGTTGAATCAGCTTTACCAGAAGGTTGGCCTGAAAACTTAGTTTCGGACTGTAAACTGCAAGAGACAGTGGGAAATGCTGTGGAACTGCTTCCAGAGTTGTGGAAGCTTGCAGGCTCTCCTCAAGACGTTATCTCATCGTTTAGGAGGGCCCTTCTTTATCATTGGAATCTTGGCATTAAAGCCAGCGCAAGAATACAAAAGGAATTTGCTTTTTTTCTTCTGTATAGTGGTTGTGAAGCTAGCCCTCCTGCTCTCCGCTCTCAGTTGGATGGTTCATTTGTGCCAAGAAGCAACTTAGAAGAGGCTGTTCTTCTGCTTCTGATTTTGCTGAGAAAATTTGTTCTTGGATACATTGAATGGGACCCTTCGTTAATTGATCACCTTTCGTTTGCTCTAAGTGTTTCTGGGGAATTCATGACTCTAGCTCAGCAGGTTGAGGAATTGCTTCCTGAAAACATGGACAGAAAAGAAAGATTCTATACTCTAGCTCTTTGTTACTGTGGAGAAGGTGAACATACGACTGCTTTGGATCTTCTAAGGAACTCTCTGAATCACAGAGAGAACTCAGACTGCATAAAGGAGCTACTTCTAGCTTCAAAAGTTTGTGCAGACAAGAAGATTTACACTGAAGAAGGAATCAGATATTCTTTCAAAGCCATTTCTCAGCTGAATGGAAAGTGCATGCAGATGGCAGCTATTGCAAATTGCTTTCTAGGCGTTCTACTGTCATCAAAATCCAGATCAGCCGCTTCTGAATCAGAGAAGATATTTTTGCAGTCTGAAGCACTCAGTGCTCTAAAGGATTCGGAGAGAACGATGAGGGAGAGCGATCCTTACATTGTCCTTCATCTTTGTCTAGAATATGCTGAACAGAGGAAGTTGAGCACTGCTATTGATCATGCAAAGAAACTGATTAAGCTTGAGGGTGGATCTAGTGTCAGTGCATATATTCTTTTAGCGCGGATTTTATCTGCTCAACGAAAGTTTGAAGATGCAGAGCTGGTTATCGATGCAGCTCTAGATCAAAGTGGGAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAACTAAGGATTGCACAGGGAAAATTAAAGAATGCGGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAGGTCCAAAATAAAAGTTTAGGCACGGCAAGTAAGAAGAGTAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAATGTGTATATGGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTGGCAAAATCTGAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACACAAAGGGTTTACTCTTTGAAGCCAGAGGTCTTCATCCAGAGGCTCTGAAATCATTTAGGAAAGCATTAGATATTGATCCCGACCATGTTCCAAGTTTGATATCTACAGCTTGTGTACTCAGACAACTTGGTGGTCAATCATCTTCAATAGTCAGAAGCCTACTCACTGATGCGTTGCGCCTTGACAGAACAAACCCATCTGCTTGGTACAATCTTGGACTGTTCTACAGAGATGATCTGGGGACATCGGCAATGGAAGCCGTTGAATGCTTTGAAGCTGCAGCTTTTCTTGAAGAATCTTCTCCCATCGAACCCTTTAGATAG 2217 0.4199 MVLGNRVECFSMRAKSLISKKQISLRLRKMIKCICSGEQLKVDELGYSSESLATRDYSASGGFSRPGENDTKIDNTNIEEAESSLRESGYLNYEEARALLGRLEYQKGNVEAALHVFEGIDIATVVPKIKVSISRRCEPNRRRSQSDAQPPMSMHAVTLILEAVFLKAKSLQALGRFQDAAQSCKTILDTVESALPEGWPENLVSDCKLQETVGNAVELLPELWKLAGSPQDVISSFRRALLYHWNLGIKASARIQKEFAFFLLYSGCEASPPALRSQLDGSFVPRSNLEEAVLLLLILLRKFVLGYIEWDPSLIDHLSFALSVSGEFMTLAQQVEELLPENMDRKERFYTLALCYCGEGEHTTALDLLRNSLNHRENSDCIKELLLASKVCADKKIYTEEGIRYSFKAISQLNGKCMQMAAIANCFLGVLLSSKSRSAASESEKIFLQSEALSALKDSERTMRESDPYIVLHLCLEYAEQRKLSTAIDHAKKLIKLEGGSSVSAYILLARILSAQRKFEDAELVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTASKKSKGNRDRRLEMEIWHDLANVYMALSQWQDAEVCLAKSEAINPYSASRWHTKGLLFEARGLHPEALKSFRKALDIDPDHVPSLISTACVLRQLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLFYRDDLGTSAMEAVECFEAAAFLEESSPIEPFR 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium600g00005 738 SUPERFAMILY TPR-like 335 562 IPR011990 GO:0005515
Vium600g00005 738 Gene3D Tetratricopeptide repeat domain 76 576 IPR011990 GO:0005515
Vium600g00005 738 Gene3D Tetratricopeptide repeat domain 577 735 IPR011990 GO:0005515
Vium600g00005 738 ProSiteProfiles TPR repeat profile. 627 660 IPR019734 GO:0005515
Vium600g00005 738 SMART tpr_5 593 626 IPR019734 GO:0005515
Vium600g00005 738 SMART tpr_5 627 660 IPR019734 GO:0005515
Vium600g00005 738 SMART tpr_5 346 379 IPR019734 GO:0005515
Vium600g00005 738 SMART tpr_5 161 194 IPR019734 GO:0005515
Vium600g00005 738 SMART tpr_5 468 501 IPR019734 GO:0005515
Vium600g00005 738 SMART tpr_5 503 536 IPR019734 GO:0005515
Vium600g00005 738 Pfam Tetratricopeptide repeat 598 660 - -
Vium600g00005 738 Pfam Tetratricopeptide repeat 477 532 - -
Vium600g00005 738 SUPERFAMILY TPR-like 540 708 IPR011990 GO:0005515
Vium600g00005 738 PANTHER PROTEIN NPG1 31 738 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium600g00005 Vium-Chr600 31859 36092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium600g00005 27 738 Calmodulin-binding Proteins AT4G28600 53.224 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium600g00005 K21843 - gmx:100789469 1272.3