Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6008g00001 ATGACAGAAAACTGCATAGCACTCAAACCAGACCACAGCAACAGTCACCCTCAGGAAGGACCCCCCAAGATCACGACTCAGACTGTCCTTCCCATACAAACAAACGACCAATCTTTTCTTAAACTAGCTATGTACCCCATAACTTTGAAGTTTGAAGAGTTGGTGTACAAAGTTAAACTGGAGCAGAAGGGTCTGTGTTGGGGGAGCACAAGGAGTTCCACAGAGAAGACCATACTGAAAGGAATCACTGGTATGGTTTGTCCGGGAGAAATAATGGCTATGTTGGGGCCATCTGGGAGTGGCAAAACCACACTTCTCACAGCCCTTGGAGGAAGGCTTAGTGGCAAACTATCTGGAAAGGTCACGTACAACAACCAGCCTTTTTCAGGAGCCATGAAAAGAAGAACAGGTTTTGTGGCTCAGGATGATGTGTTATACCCCCATCTCACTGTGACCGAAACACTACTCTTCACTGCACTTCTCAGGCTTCCCAACATCTTGACCAAGGAAGAAAAAGCTCAGCATGTTGAGCATGTAATCAGTGAGCTAGGCCTGAGCAGGTGCAGGGGTAGCATGATTGGAGGCCCTCTATTCAGAGGGATATCAGGAGGGGAGAGAAAAAGGGTGAGCATAGGCCAGGAAATGTTAATCAATCCAAGCCTGTTGCTGCTGGATGAACCCACTTCTGGCTTGGACTCTACAACAGCACAAAGGATCATAACCACAATCAAACGCTTGGCCAGTGGAGGGAGAACTGTTGTCACCACCATTCATCAACCCTCTAGTCGCCTCTATCACATGTTTGATAAACTGGTCTTGCTCTGTGAAGGATGTCCCATCTATTATGGCCCCGCTTCAACTGCAATGGCCTACTTTTCTTCTGTTGGTTTTTCCACATCCATGATTGTCAATCCAGCTGACTTGTTGCTTGATCTTGCCAATGGAATTGCTCCGGACTCCTCCAAGCTTGCAACTGAACAAAGTGAAAGCCAGGAGGCAGAAAATAAGTTGGTTAGAGAAGCCTTAATCTCTGCTTATGAAAAAAATATAGCTACTAAGCTGAAAGAAGAATTATGCAGCTTGGAATGCGAAGTCTTTAGGAATGCTTCCACAAGAAATCACATAAAACCGGAGCGATGGTGCACAAGTTGGTGGCATCAGTTCAAAGTGCTGTTGCAAAGGGGGCTGAAGGAGAGAAGGTTTGAAGCCTTCAACAAGCTGAGAATTTTCCAAGTCATAAGTGTCGCTTTCCTTGGAGGACTTCTGTGGTGGCACACCCCAGAATCCCACATTGGAGACCGGATAGCCCTTCTGTTTTTCTTCTCTGTCTTCTGGGGATTCTACCCTCTCTACAATGCTGTTTTCACATTCCCACAAGAGAGAAGAATGCTGATCAAGGAACGTTCATCTGGGATGTACCGTCTCTCATCCTACTTTCTAGCAAGAACAGTAGGAGACTTGCCAATAGAGCTTGCACTTCCAACTGCATTTGTCTTCATAATCTATTGGATGGGAGGGCTTAATCCTCATCCACTGACCTTTCTCCTTTCCCTCCTAGTGGTCCTTTACAGTGTCCTTGTCTCTCAAAGCCTAGGCTTAGCACTTGGTGCCATTTTGATGGAGGTCAAACAGGCCACTACTTTAGCTTCTGTCACAACCCTTGTGTTCCTCATTGCCGGAGGGTACTATATACAGCAGATTCCTCCCTTCATAGAGTGGCTCAAGTACATAAGCTATAGCTACTACTGTTACAAGCTTCTTGTTGGTGTGCAGTACATGGATGATGATTATTATGAGTGCTCAAAAGGGGTCTTGTGCAAGGTTGCAGAATTTCCTCCAATCAAATCAGTGGGTTTGAATCACTTGTGGGTGGATGTGTCTATAATGGCCATGATGTTGGTAGGTTACAGACTAGTTGCTTATTTAGCACTGCAGAGAGTGAGGTAG 1947 0.4587 MTENCIALKPDHSNSHPQEGPPKITTQTVLPIQTNDQSFLKLAMYPITLKFEELVYKVKLEQKGLCWGSTRSSTEKTILKGITGMVCPGEIMAMLGPSGSGKTTLLTALGGRLSGKLSGKVTYNNQPFSGAMKRRTGFVAQDDVLYPHLTVTETLLFTALLRLPNILTKEEKAQHVEHVISELGLSRCRGSMIGGPLFRGISGGERKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRIITTIKRLASGGRTVVTTIHQPSSRLYHMFDKLVLLCEGCPIYYGPASTAMAYFSSVGFSTSMIVNPADLLLDLANGIAPDSSKLATEQSESQEAENKLVREALISAYEKNIATKLKEELCSLECEVFRNASTRNHIKPERWCTSWWHQFKVLLQRGLKERRFEAFNKLRIFQVISVAFLGGLLWWHTPESHIGDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTVGDLPIELALPTAFVFIIYWMGGLNPHPLTFLLSLLVVLYSVLVSQSLGLALGAILMEVKQATTLASVTTLVFLIAGGYYIQQIPPFIEWLKYISYSYYCYKLLVGVQYMDDDYYECSKGVLCKVAEFPPIKSVGLNHLWVDVSIMAMMLVGYRLVAYLALQRVR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6008g00001 648 CDD ABCG_EPDR 46 283 - -
Vium6008g00001 648 ProSitePatterns ABC transporters family signature. 201 215 IPR017871 GO:0005524|GO:0016887
Vium6008g00001 648 SMART AAA_5 88 278 IPR003593 GO:0016887
Vium6008g00001 648 FunFam ABC transporter G family member 22 66 295 - -
Vium6008g00001 648 Pfam ABC-2 type transporter 387 592 IPR013525 GO:0016020|GO:0140359
Vium6008g00001 648 Pfam ABC-2 type transporter 258 323 IPR043926 GO:0140359
Vium6008g00001 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 294 IPR027417 -
Vium6008g00001 648 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 301 IPR003439 GO:0005524
Vium6008g00001 648 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 28 641 - -
Vium6008g00001 648 Pfam ABC transporter 79 229 IPR003439 GO:0005524
Vium6008g00001 648 MobiDBLite consensus disorder prediction 1 25 - -
Vium6008g00001 648 Gene3D - 67 295 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6008g00001 Vium-Chr6008 12110 15721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6008g00001 72 262 Calmodulin-binding Proteins AT2G36910 30.653 1.70e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6008g00001 K05681 - gmx:100776279 1139.79