LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6003g00072	ATGGCCCATTTTCAAAAATGGATAAGGAAATTTTGGTCATTTTGTAACATTTCGTATATAAACTTCATAAACCAAAACGTAAACCCTAGAGCCGGGTTTGTTCCTCTGCGCAGGAATTCGGAATATTTGACGGGTAGAGTTTTTTTTTCGATGGCTCCCGCTAAAGTTGATAGTTCTAAGAAGGGTGATCCAAAGGCACAGGCCTTGAAAACTGCTAAGGCAGTTAAGTCTGGACCTACCTTTAAGAAGAAGGCGAAGAAGATCCGAACTTCTGTGACTTTCCACAGGCCGAAGACCTTGAAGAAGGATAGGAATCCTAAATACCCTCGCATTAGTGCGCCACCAAGGAACAAGCTTGATCATTATCAGATCCTGAAGTTCCCTCTTACTACTGAGTCTGCTATGAAGAAGATCGAGGACAACAACACTTTGGTTTTCATCGTCGACCTACGTGCGGACAAGAAGAAGATCAAGGATGCAGTGAAGAAAATGTATGACATCCAGGCGAAGAAGGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCTTATGTCAGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATCGGCATCATCTAA	615	0.4358	MAHFQKWIRKFWSFCNISYINFINQNVNPRAGFVPLRRNSEYLTGRVFFSMAPAKVDSSKKGDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	204

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium6003g00072	204	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	121	197	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Vium6003g00072	204	ProSitePatterns	Ribosomal protein L23 signature.	182	197	IPR001014	GO:0019843
	Vium6003g00072	204	Pfam	Ribosomal protein L23	124	186	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vium6003g00072	204	PANTHER	60S RIBOSOMAL PROTEIN L23A	57	204	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vium6003g00072	204	FunFam	60S ribosomal protein L23a	84	204	-	-
	Vium6003g00072	204	Hamap	50S ribosomal protein L23 [rplW].	124	204	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vium6003g00072	204	Gene3D	-	85	204	IPR012677	-
	Vium6003g00072	204	Pfam	Ribosomal protein L23, N-terminal domain	65	114	IPR005633	-
	Vium6003g00072	204	NCBIfam	50S ribosomal protein L23	128	204	IPR019985	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6003g00072	Vium-Chr6003	449646	451252	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium6003g00072	51	204	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	87.662	2.47e-69	207

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium6003g00072	K02893		-	jre:109021970	295.434