Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00071 ATGTCTTCTGTTTCTGCTGAAAGCAGTAACCCTGCTCCATGGAAGCTGGAAGAGATTGTTTCAATTATTATAGTGTGCATTATCTTTCTTACACTGAGTGATTGCTTCGGCGTATTCAAGCGTCTGTTGCGTGGAATTTCCCGAAACAGAAACCAGGTTCCAAGGAGGTTTCTAGATGTGACCGTTCTCGACGATGATCCTTCCATGCAGGTTCAAAGCCGAGGATTGGAGTTCTGTGTGGTGCAGTCTCTTCCAACGATTGAGTTCAAGAGAAACGAGGCAGAACAAGACAAGGGAAGTAATGTGGAATGTGTCATTTGTCTTGGAGAGTTTGAGGAAGGGGAGAGACTGAAACATCTTCCAGAATGCAGCCATAGCTTCCATGTTTCATGCATTGACAAGTGGTTTCAGTCTCATTCAAATTGTCCTCTGTGTAGAGCATTTGTGCATCATCCCATGCTGCACTTTTCCGTAGATGCTTCTCACACATTGCTACAGCCTTTGAGGAGGGAAGACTTTGAAAGGGATAATCTGCCTAGCACACAACAGTTCCTTCCCCCTTGA 564 0.4504 MSSVSAESSNPAPWKLEEIVSIIIVCIIFLTLSDCFGVFKRLLRGISRNRNQVPRRFLDVTVLDDDPSMQVQSRGLEFCVVQSLPTIEFKRNEAEQDKGSNVECVICLGEFEEGERLKHLPECSHSFHVSCIDKWFQSHSNCPLCRAFVHHPMLHFSVDASHTLLQPLRREDFERDNLPSTQQFLPP 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00071 187 Pfam Ring finger domain 103 146 IPR001841 -
Vium6003g00071 187 FunFam E3 ubiquitin-protein ligase ATL6 52 152 - -
Vium6003g00071 187 SMART ring_2 104 145 IPR001841 -
Vium6003g00071 187 SUPERFAMILY RING/U-box 80 153 - -
Vium6003g00071 187 CDD RING-H2_EL5-like 103 146 - -
Vium6003g00071 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 151 IPR013083 -
Vium6003g00071 187 PANTHER RING-H2 FINGER PROTEIN ATL16 20 162 IPR044600 GO:0016567|GO:0016740
Vium6003g00071 187 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00071 Vium-Chr6003 447902 448927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00071 66 149 Rapid Response to Elicitors AT3G16720 51.136 2.00e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00071 - - gmx:121172630 243.047