Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00064 ATGGTTCTGGAAGAAATGAGAAGGGGTCCGTGGACAGAAGAGGAGGACTTGAAACTGGTGTATTTTGTAAACATGTTTGGAGATCGTAGGTGGGACTTTATAGCAAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTCCACCCTGATCTCAAACGAGGGAAGCTGACATCCCAAGAAGAACACCTCGTCATGGAGCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGGAAGCTACCAGGCCGTACTGACAACGAGATTAAGAATTTCTGGAGGACTTTCATGAGGAAAAAGAAGGCTCTAGAGAAAAAACGAGCATCGCCATCCTCCTCCTCGTCATCATCTTCACTGTCCTCAATCAACCATGCTGTGGATTCACATGCTTCCAAAGAGGTTGGAGAGGAGAGCTTTTACGACACAGGTGGATATGGATACGATGATGTAACAGGGTTGATCAGTGCTGGAGAAGAGTTCTCTTTGGATGATATATGGAAAGATATTGTTTTGTCAGAAGATGATACTATTCAGCAACAACCTCTGTACGAATTGCAGAGTCAAGAGGGTTGCAACTTCTCTTCTCCACCTGCAATGATTTATTCTCCATCATCATGGGAGTACAATTCTTCTCACCCCTTATGGGTGATGGATGAAGAAGAAAGTAGCAAGATGTTGTTTCCTGCATCAAGTGACCAATACTATTATTCCTGCTACGAACAGGGGAATGCATTTCTAACTGGCTAA 774 0.4354 MVLEEMRRGPWTEEEDLKLVYFVNMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPDLKRGKLTSQEEHLVMELHSKWGNRWSRIARKLPGRTDNEIKNFWRTFMRKKKALEKKRASPSSSSSSSSLSSINHAVDSHASKEVGEESFYDTGGYGYDDVTGLISAGEEFSLDDIWKDIVLSEDDTIQQQPLYELQSQEGCNFSSPPAMIYSPSSWEYNSSHPLWVMDEEESSKMLFPASSDQYYYSCYEQGNAFLTG 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00064 257 FunFam MYB-related transcription factor 64 110 - -
Vium6003g00064 257 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vium6003g00064 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vium6003g00064 257 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 126 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vium6003g00064 257 Gene3D - 8 60 - -
Vium6003g00064 257 CDD SANT 65 106 IPR001005 -
Vium6003g00064 257 Pfam Myb-like DNA-binding domain 61 104 IPR001005 -
Vium6003g00064 257 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vium6003g00064 257 FunFam Myb transcription factor 8 60 - -
Vium6003g00064 257 SMART sant 60 108 IPR001005 -
Vium6003g00064 257 SMART sant 7 57 IPR001005 -
Vium6003g00064 257 Gene3D - 64 107 - -
Vium6003g00064 257 CDD SANT 10 55 IPR001005 -
Vium6003g00064 257 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vium6003g00064 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Vium6003g00064 257 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00064 Vium-Chr6003 409154 410544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00064 1 255 MYB Transcription Factor Family AT5G59780 51.172 1.71e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium6003g00064 Myb_DNA-binding 5.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00064 K09422 - gmx:100776886 366.696