Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00058 ATGACTAATTGTTTGATGTTACAAGCCAAAGTTGAGGAAGATCCACTAAGAGAGAAGGTTCTAAAGAGTGGTGAATTTAAGTGTAAGACATGTAACAAGCAGTTCCTTTCGTTTCAAGCCCTTGGAGGCCACCGAGCTAGCCACAAGAACCTAAACCGAATGGCTTCAAACCTTTCGAGTTCGATGGTGACGCCAAGATTGCACCAATGCTCAATTTGTGGACTTGTGTTTGGTCTTGGACAAGCTTTGGGAGGACATATGAGAAAGCATAGAGTTTCTTCAAATGATGCCTTGTCAACTATTCATGACCAAGATTTGCCAGAATCTAATGTCACTAAAAAGCTTCGTTTGTGGTTGGACTTGAACTTGACACCGTACGAGAATTATCTTACCCTCAATTCAATGACACCTGTTTTACATTTGTTCTTGTGA 432 0.4097 MTNCLMLQAKVEEDPLREKVLKSGEFKCKTCNKQFLSFQALGGHRASHKNLNRMASNLSSSMVTPRLHQCSICGLVFGLGQALGGHMRKHRVSSNDALSTIHDQDLPESNVTKKLRLWLDLNLTPYENYLTLNSMTPVLHLFL 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00058 143 Gene3D Classic Zinc Finger 23 90 - -
Vium6003g00058 143 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Vium6003g00058 143 Pfam C2H2-type zinc finger 68 91 - -
Vium6003g00058 143 Pfam C2H2-type zinc finger 26 49 - -
Vium6003g00058 143 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Vium6003g00058 143 PANTHER ZINC FINGER PROTEIN ZAT5 18 125 - -
Vium6003g00058 143 SUPERFAMILY beta-beta-alpha zinc fingers 26 90 IPR036236 -
Vium6003g00058 143 SMART c2h2final6 26 48 IPR013087 -
Vium6003g00058 143 SMART c2h2final6 68 90 IPR013087 -
Vium6003g00058 143 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Vium6003g00058 143 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00058 Vium-Chr6003 377075 377506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00058 1 128 C2H2 Transcription Factor Family AT2G28710 45.588 2.23e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6003g00058 zf-C2H2_6 1.4e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00058 - - gmx:112998408 188.348