Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00056 ATGCAATTAACCAGTGCATTAACGAAAGGCAACCTTCTTCTTTCCCTCTTATCTAGATTTCTGTGTGTGCGTCATCATTCATCAGCCAACTTGTTTGTCGCAGGACTTTCCTGGAATACCAATGAATCGATTCTGAGATATGCCTTTGAGAAACATGGTGAAATCGTTGAAGTTAGAGTAATATGTGATCATGTGACTGCGAAATCAAGAGGTTATGGATTTGTGCGGTTTGTTTCTGAAACTGCAGCTGCTACAGCTCGCAAAGAAATGAATGGCCAGATACTGGATGGAAGACGCATTCGGGTTACTTATGCACACAAAGGCTAG 327 0.419 MQLTSALTKGNLLLSLLSRFLCVRHHSSANLFVAGLSWNTNESILRYAFEKHGEIVEVRVICDHVTAKSRGYGFVRFVSETAAATARKEMNGQILDGRRIRVTYAHKG 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00056 108 Gene3D - 22 108 IPR012677 -
Vium6003g00056 108 SMART rrm1_1 30 103 IPR000504 GO:0003723
Vium6003g00056 108 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Vium6003g00056 108 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 25 107 - -
Vium6003g00056 108 SUPERFAMILY RNA-binding domain, RBD 26 107 IPR035979 GO:0003676
Vium6003g00056 108 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00056 28 107 Eukaryotic Initiation Factors Gene Family AT4G34110 42.500 3.31e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00056 K13195 - gmx:100306540 168.318