Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00054 ATGTCTGCGGCTCTGGATTTGACGCTCGATGACATCATCAAGAATAACGAAAAATCTGGATCCGGAAACTTCCGTGGCCGGAACCGATCATCCGGATCCGGACACGGACCTTCACGCCGCTTCCCTAACCGTTCTGCCAACCGCGCTGCTCCATATGCCACCGCCAAGGCGCCCGAGGCGACTTGGAAGCACGATTTATATGCAGATCAGCTCGTGGCTGCGGCGGGGTACCCTTCTCAAGGTGGTTCTGCGTCTTCCATGGAAACTGGGACCAAACTTTACATTTCTAACTTGGATTATGGCGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATGGGGTTCACTACGACAGGAGTGGAAGATCGGAGGGTACTGCAGAAGTAGTATTTTCACGACGAGCTGATGTTGTAGCTGCTGTAAAGAGATACAACAATGTTTAATTAGATGGGAAACCAATGAAGATAGAGATTGTGGGAACAAACATTTCTATGCCTGGTGTTCCCGCTGCAAACAGAGCTATTGGAAATTTGAATGGAGGTCCTCGAAGTGGACAAGGAAGAAGTGGGGCATTTAGAAAGCCAGGAGGAAGAGGGCAAGGCATTCAAAGGGATGGAGGTCAAGGAAGAGGTCGTGGTGGAGGAAGACGTGACGAAAAGTTATCTGCAGATGATCTGGATGCTGATCTGGAGAAATATCATGCAGAGTCAATCCAATTGAACTAA 747 0.4833 MSAALDLTLDDIIKNNEKSGSGNFRGRNRSSGSGHGPSRRFPNRSANRAAPYATAKAPEATWKHDLYADQLVAAAGYPSQGGSASSMETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSEGTAEVVFSRRADVVAAVKRYNNVXLDGKPMKIEIVGTNISMPGVPAANRAIGNLNGGPRSGQGRSGAFRKPGGRGQGIQRDGGQGRGRGGGRRDEKLSADDLDADLEKYHAESIQLN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00054 248 CDD RRM_THOC4 91 165 - -
Vium6003g00054 248 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 243 - -
Vium6003g00054 248 Pfam C-terminal duplication domain of Friend of PRMT1 188 242 IPR025715 -
Vium6003g00054 248 SMART FoP_duplication_2 168 244 IPR025715 -
Vium6003g00054 248 FunFam THO complex subunit 4 84 230 - -
Vium6003g00054 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
Vium6003g00054 248 Gene3D - 78 231 IPR012677 -
Vium6003g00054 248 SMART rrm1_1 92 164 IPR000504 GO:0003723
Vium6003g00054 248 MobiDBLite consensus disorder prediction 217 241 - -
Vium6003g00054 248 SUPERFAMILY RNA-binding domain, RBD 31 165 IPR035979 GO:0003676
Vium6003g00054 248 MobiDBLite consensus disorder prediction 16 40 - -
Vium6003g00054 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 168 IPR000504 GO:0003723
Vium6003g00054 248 MobiDBLite consensus disorder prediction 16 52 - -
Vium6003g00054 248 MobiDBLite consensus disorder prediction 178 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00054 Vium-Chr6003 346704 351013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00054 90 165 Eukaryotic Initiation Factors Gene Family AT2G23350 32.895 6.88e-08 51.2