Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00038 ATGGCGAATACACTCATTTCGTCTCCTTCGTTCCTCGGCACGCCTCTTCCCTCGCTCCAACGCCACCACCGCACCACCACCAGGCTTGTCGCCACCAAGGTCCACGTCAGCCTCCACCAAATCCCCCCTCTCCACTCCATAAGCCACTCCATCGACTTCGTCGGTATCGCCACCAGAGCTGAAGGCCTTCTTTACACTCTCGCTGACGCTGCGGTTGCGGCGGACCCGGCTGCTCCCGCCACTGATGCTGCCGTGCAGAAGAACGGAGGCTGGTTCGGCTTCATCTCCGAAGCCATGGAGGCTATTCTCAAGGTGTTGAAGGATGGCCTTTCTGCTGTGCATGTGCCTTATGCATATGGATTTGCTATCATATTACTCACTGTTATAGTTAAGGCTGCAACACTTCCCTTGACAAAGCAACAGGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCTATTCAAGAAAGATATGCTGGCAATCAGGAAAGAATACAGCTTGAGACATCAAGGCTATATCGGCAGGCTGGGGTTAATCCATTGGCAGGTTGTTTACCTACTTTGGCCACAATTCCAGTCTGGATTGGTCTCTACCAAGCATTGTCAAATGTGGCAAACGAGGGACTATTGACTGAGGGTTTCTTTTGGATACCCTCTTTGGCTGGTCCTACTACCATTGCTGCTAGGCAAAGTGGAGCTGGAATTTCTTGGCTTTTTCCATTTGTGGATGGGCATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGCTTTACCCATTCTTCTTGTCATTTCTCAATTTGTTTCAATGGAAATCATGAAACCACCTGAGACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATCGGCTACTTCTCACTATCTGTCCCATCAGGATTAACAATTTACTGGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGCAAATTGGGGGGTGCAAAGCCTGTTGTGAATGAAAATGCCAGTGGGATTATTACTGCAGGACGAGCTAAAAGATCTGACTTGCAGCCGGCAAAAGGCGGTGAAAGGTTTAAGCAGTTAAAAGAAGAGGAAAAGAAGAAAAAGTTAAGCAAGGCACTGCCAGTGGAAGATGTTCAGCCTCTGGCATCTATTTCTGCTTCTGATGATGGCTCGGACATAGATAGTGACAGCAAGGAACAGGAAGTTGAAGAAGGAGCCTATGCTTCTAAAGTTGGTGAAGAGGTTCAAATTAATTCTAGGGAAAAAAGAAGCAAGCGTTCGAAGCGGAAGCGTGCTGTATAA 1332 0.467 MANTLISSPSFLGTPLPSLQRHHRTTTRLVATKVHVSLHQIPPLHSISHSIDFVGIATRAEGLLYTLADAAVAADPAAPATDAAVQKNGGWFGFISEAMEAILKVLKDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLAGPTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLALPILLVISQFVSMEIMKPPETDPSQKNQLLILKFLPLMIGYFSLSVPSGLTIYWFINNVLSTAQQVWLRKLGGAKPVVNENASGIITAGRAKRSDLQPAKGGERFKQLKEEEKKKKLSKALPVEDVQPLASISASDDGSDIDSDSKEQEVEEGAYASKVGEEVQINSREKRSKRSKRKRAV 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00038 443 CDD 5TM_YidC_Alb3 120 332 IPR047196 -
Vium6003g00038 443 NCBIfam membrane protein insertase YidC 119 331 IPR028055 -
Vium6003g00038 443 MobiDBLite consensus disorder prediction 390 443 - -
Vium6003g00038 443 Pfam 60Kd inner membrane protein 119 332 IPR028055 -
Vium6003g00038 443 PANTHER OXA1 68 377 IPR001708 GO:0016020|GO:0032977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00038 Vium-Chr6003 283045 290050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00038 21 388 Chloroplast and Mitochondria Gene Families AT2G28800 68.108 4.47e-179 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00038 K03217 - gmx:100813782 716.842