Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00036 ATGGAGGAGAGTGGAAACGAAGAGTTGGAGATGGGAGGGTCTAATGGTGTTGCAGCCAGTTCACGGTGGAACCCTACAAAAGAGCAAATAACCATGCTAGAGAACCTGTATAAGCAGGGAATAAAGACTCCCAGTGCTGAGGAGATACAGCAGATAACTGCTAGGCTTAGGGCGTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTCAGAATCACAAAGCTAGGCAGCGACAGAAGCAGAAGCAAGACACCATCGCTTACTTCAATCGCTTTCTTCATACTCCTCAGCCCTTTTTTTCTCCGCCAATTTGCCCAAACGGCCTGTGTCCTCCGTATTGCATACCTCAGGTGCAGAGTGAAAATGGGTTTTATCCCCCACATCCAAAGGTGCTTGTACCAGTAGGTTTTAGGAGAAGACCATCTGAGATATTTGTGCCCACAGACATGTCAAACGTTATCAGCAACGGTCCGCTGTTATACGAAGGAATGCAACAGAGAATCTCGGATTGCAACTTGAGCTACAGTAACCAAGAAACGTTGGATCTTTTTCCTCTGCACCCAACTGGTATTTTGGAAGGGAAAACAACATACCAGGTGTCTTCTCTGGCTTCAGTTTCTGCTGATAGTTCCACTGATATCAATGAAAATGATCCTTCCCCTCTTAACAAACCCTTCTTTGATTTTTTTACTACTTCTGGACAAGGTTCTTAG 717 0.4505 MEESGNEELEMGGSNGVAASSRWNPTKEQITMLENLYKQGIKTPSAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQDTIAYFNRFLHTPQPFFSPPICPNGLCPPYCIPQVQSENGFYPPHPKVLVPVGFRRRPSEIFVPTDMSNVISNGPLLYEGMQQRISDCNLSYSNQETLDLFPLHPTGILEGKTTYQVSSLASVSADSSTDINENDPSPLNKPFFDFFTTSGQGS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00036 238 MobiDBLite consensus disorder prediction 1 21 - -
Vium6003g00036 238 Pfam Homeodomain 20 80 IPR001356 GO:0003677
Vium6003g00036 238 FunFam WUSCHEL-related homeobox 4 20 87 - -
Vium6003g00036 238 SUPERFAMILY Homeodomain-like 21 85 IPR009057 -
Vium6003g00036 238 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 8 229 IPR044555 GO:0003700|GO:0099402
Vium6003g00036 238 CDD homeodomain 22 82 IPR001356 GO:0003677
Vium6003g00036 238 ProSiteProfiles 'Homeobox' domain profile. 16 81 IPR001356 GO:0003677
Vium6003g00036 238 Gene3D - 20 88 - -
Vium6003g00036 238 SMART HOX_1 18 85 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00036 Vium-Chr6003 265520 267137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00036 16 232 Wox Gene Family AT5G59340 44.813 2.35e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium6003g00036 Homeodomain 4.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00036 - - pvu:PHAVU_011G064900g 444.891