Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00035 ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCACCAGCAACCCAACCATCCTCAGGCCAATGGCAGTGACAACACTCAGCTTCTTCCACCTTTGCCACCGCAGCAGACTCATGTGGGAGCTTCTGTGGGATCAATCAGGCCAGGTTCCATGGCTGATCGAGCTAGGCTGGCTAAGATACCTCCTCCTGAAGCAGCTCTCAAGTGTCCACGTTGTGAATCCACCAACACTAAATTTTGCTATTTCAACAACTATAGCCTCTCTCAGCCACGCCACTTCTGCAAGACTTGCCGGCGTTATTGGACAAGAGGGGGTGCTCTAAGAAACGTTCCTGTGGGTGGAGGCTGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAGTCTCCAGCATCATCTGACAAACAAACACTGTCTGGTTCTTCTGGTGCACTCCCCTCTGGTGGAAACACTCACGAGCTTATAGGCCAGTTGCCGCAACCACCGAACCTTCCCTTCATGGCATCACTCCAGAACCTGAACCGTTATGCTGTCGGAAACATGGGTCTCGGGTTGCGTGAGATTCACGGACAGAACGATCACATGGGTTTTCAAATTGGTGGCAGCGGTAATTCCTCTGCTGGTGGAGGAATGGATCAGTGGCGTTTGCAGCAGATTCCTTTCTTTAATGGTTTTGAATCTGCTTCAGCTGGTTCCTACCATTTTCAAAATGAAAGTATTGAAACACCTTCTGGTTTGGTTGGAGATTTAGCAACGAATTCTAGGGTTTCTCAGATGCCATCAGTTAAAATGGAAGAAAGTGGAGCTTTGAATTTGTCAAGATCACCACTGAACGTCTCAGAAAATAACCACTACTATTCATGGACTGATATGTCAGGTCTTTCCTCTTCTTCTGCTACTCATCTCTTGTAA 924 0.4762 MVFSSIPVFVDPPNWHQQPNHPQANGSDNTQLLPPLPPQQTHVGASVGSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPASSDKQTLSGSSGALPSGGNTHELIGQLPQPPNLPFMASLQNLNRYAVGNMGLGLREIHGQNDHMGFQIGGSGNSSAGGGMDQWRLQQIPFFNGFESASAGSYHFQNESIETPSGLVGDLATNSRVSQMPSVKMEESGALNLSRSPLNVSENNHYYSWTDMSGLSSSSATHLL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00035 307 MobiDBLite consensus disorder prediction 16 33 - -
Vium6003g00035 307 MobiDBLite consensus disorder prediction 115 164 - -
Vium6003g00035 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 49 227 IPR045174 GO:0003700|GO:0006355
Vium6003g00035 307 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Vium6003g00035 307 MobiDBLite consensus disorder prediction 12 33 - -
Vium6003g00035 307 MobiDBLite consensus disorder prediction 135 161 - -
Vium6003g00035 307 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
Vium6003g00035 307 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00035 Vium-Chr6003 242893 244642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00035 37 306 C2C2-Dof Transcription Factor Family AT3G55370 43.333 2.01e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium6003g00035 zf-Dof 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00035 - - gmx:100816635 525.398