Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00034 ATGGAGGGGGAAAACGCGAGCAAGGTGATTGAGTTGGTGAACGAGATAGCGAGTATCTCCGATTACAGGCCTCCGGTGAAGAAGCAGTACTGCAATTTGGCGCGGAGGTTGAAGCTGTTGATCCCGATGTTCGAGGAGATTAGGGACATGAAAGACCAGATCCCCGAGGACACTTCCAAAGCCGTCCTCGCCTTCAAGGAAGCTCTCGAATCCGCCAGGGAACTTCTCAGATTTGGAAGCGAAGGCAGCAAGCTTTTCTTGGTCCTTGAGCGGGATGGCATTATGAATAAATTCCACGACGTGACAGCTCGGCTGGAACAATCGTTGGGTGGTATTTCGTATGATAAACTTGATATCTCAGATGAAGTTAAAGAGCAGGTTGAGCTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGACGAACCAGATGTTAGGTTGTATGAGGATATGTTGTTCCTCTACGACAACAGCAGTGATGCAGCTACAGATCCATCTGTTCTAAGTCGACTGGCTGAAAAATTGCAACTGATGGGAATAGCTGATCTTACGCAAGAATCGCTAGCTTTGCATGAGATGGTGATATCAAGTGGTGGGGATCCTGGGGCACGCATCGAGAAAATATCAATGTTACTGAAGAAGATAAAGGATTACGTGCAAACAGAAAATCTAGTTAAGGATGATAATTTAGGAGGAAAAGGCATTTTTGCAAAAGTCTATGGAGTCAGTACAAATGAAAAGAGTCATCAGGCCCCTGTTATTCCTGATGATTTTCGATGTCCCATTTCCCTGGAATTAATGAAGGATCCTGTGATTGTTTCAACCGGACAGACTTACGAGCGTTCTTGTATTGAGAAATGGTTGCAAGCAGGGCATGGGACATGCCCCAAGACACAGCAGACTCTCACTAGCACCGTTCTCACACCCAACTATGTCCTACGAAGTCTCATAGCACAGTGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCAGCAGTTCACAACCTGGTAAATCAGCATCAGCCTACTCACCAGCTGAGCGAAGTAAGATCGACGGTCTTCTCCAAAAGCTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCTGCTGGTGAGATCCGCCTTCTTGCAAAGCGTAATGCAGATAACCGTGTTGCCATTGCTGAAGCTGGTGCAATACCTCTCCTCGTTGGTCTTTTGTCTGTGCCTGACTCCCGCACTCAAGAACATGCTGTGACAGCGCTTCTGAATCTTTCCATATATGAAAATAACAAAGGAAGCATTGTCTCTTCAGGGGCAGTTCCAGGTATAGTTCACGTGCTGAAGAAGGGAAGCATGGAAGCGCGGGAAAATGCTGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTACAATTGGATCTTCAGGAGCCATACCTCCACTAGTGACACTGCTGAGTGAGGGTACCCAGAGGGGTAAGAAAGATGCTGCGACAGCACTCTTCAATTTGTGCATTTACCAGGGCAACAAGGGGAAGGCAGTGCGGGCTGGCGTTATTCCCACACTGATGCGACTGCTGACTGAACCTAGTGGGGGAATGGTAGATGAAGCATTAGCTATTTTGGCGATACTGGCTAGCCATCCTGATGGGAAGGCTACGATTAGAGCTTCAGAGGCAGTGCCAGTTTTAGTAGGGTTCATTGGGAATGGTTCCCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTAGTTCATCTCTGTTCTGGAGATCAACAATATCTGGTACAGGCCCAAGAACTGGGGGTGATGGGTCCACTGTTGGAGTTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTTTACAGTTACTAGAGCGTATGGGAAGGTTGCTGGAGCAACAGCAGGAAGTTCCAACACAAACTGAAACTCAAGCCCAGAACGAGGAAACTCAACCTCCTTTGATTACTAACCCCGATGATTCCTAA 1986 0.4748 MEGENASKVIELVNEIASISDYRPPVKKQYCNLARRLKLLIPMFEEIRDMKDQIPEDTSKAVLAFKEALESARELLRFGSEGSKLFLVLERDGIMNKFHDVTARLEQSLGGISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDVRLYEDMLFLYDNSSDAATDPSVLSRLAEKLQLMGIADLTQESLALHEMVISSGGDPGARIEKISMLLKKIKDYVQTENLVKDDNLGGKGIFAKVYGVSTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLQAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSSSSQPGKSASAYSPAERSKIDGLLQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPDGKATIRASEAVPVLVGFIGNGSPRNKENAAAVLVHLCSGDQQYLVQAQELGVMGPLLELAQNGTDRGKRKALQLLERMGRLLEQQQEVPTQTETQAQNEETQPPLITNPDDS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00034 661 MobiDBLite consensus disorder prediction 328 350 - -
Vium6003g00034 661 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Vium6003g00034 661 FunFam RING-type E3 ubiquitin transferase 255 328 - -
Vium6003g00034 661 Pfam Neurochondrin 518 639 IPR008709 -
Vium6003g00034 661 CDD RING-Ubox_PUB 256 308 IPR045210 -
Vium6003g00034 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Vium6003g00034 661 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Vium6003g00034 661 FunFam RING-type E3 ubiquitin transferase 339 490 - -
Vium6003g00034 661 MobiDBLite consensus disorder prediction 330 345 - -
Vium6003g00034 661 Gene3D - 4 114 IPR036537 GO:0007166
Vium6003g00034 661 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Vium6003g00034 661 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515
Vium6003g00034 661 Pfam Armadillo/beta-catenin-like repeat 466 504 IPR000225 GO:0005515
Vium6003g00034 661 SUPERFAMILY ARM repeat 354 627 IPR016024 -
Vium6003g00034 661 SUPERFAMILY RING/U-box 244 331 - -
Vium6003g00034 661 CDD MLKL_NTD 7 135 - -
Vium6003g00034 661 FunFam RING-type E3 ubiquitin transferase 2 115 - -
Vium6003g00034 661 SMART arm_5 547 587 IPR000225 GO:0005515
Vium6003g00034 661 SMART arm_5 465 505 IPR000225 GO:0005515
Vium6003g00034 661 SMART arm_5 589 629 IPR000225 GO:0005515
Vium6003g00034 661 SMART arm_5 383 423 IPR000225 GO:0005515
Vium6003g00034 661 SMART arm_5 506 546 IPR000225 GO:0005515
Vium6003g00034 661 SMART arm_5 424 464 IPR000225 GO:0005515
Vium6003g00034 661 Gene3D - 342 491 IPR011989 -
Vium6003g00034 661 Gene3D - 492 637 IPR011989 -
Vium6003g00034 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Vium6003g00034 661 FunFam RING-type E3 ubiquitin transferase 530 648 - -
Vium6003g00034 661 PANTHER U BOX DOMAIN-CONTAINING 25 629 - -
Vium6003g00034 661 MobiDBLite consensus disorder prediction 634 661 - -
Vium6003g00034 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 436 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00034 Vium-Chr6003 233741 238724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00034 1 661 U-box Gene Family AT3G46510 69.415 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00034 - - gmx:100812160 1167.14