Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00031 ATGAAAATCAAAAGGAATTCTAGTAAAGCAAACTTTGCTGCGAAAAATGCTCCTCCATTCTGTGAAATATGGTTTGTCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAACTCATTGTTTTGTATCTTCCCATGCTCAACCTGAGACTACAACGGCAGAGAGTTTGAGTTGTAGATCTCTTCAATATGGTACAACTGAATTGCTCCATTCAGAATGTCTTCAATCAAATTCTGCAAGGGCTACAAGAAGTACAGTTCCGAATGTAATCATTGAAGCAGAAGCCACTTTTTCATCCAAATCATCCAGTTGTAGTAGTCATTGTTCTCCCCAACATTCAGAATTTGAGGAAGAAACAATAGATATTCATCTTATTGAAGCCAAAGCAGAAGCTAATGCTGCAACAGATGTGGAGCTGTTGAAGTGCAGAAGGTTGGAATTCAAAGCCATTGAGGCCATTAGTAAGGTGAACTTATTTGAATCTGCCCATGCACATGAAGTAAAGCTCAGAAAAGAGGTTGAGGATGCAGTGAGAGCTACAATAAAGGAGCAACGGATGTTTTTGGAGGAGAAAGAAAAAATTGCTAGTGAACTGGAAAGGACCACAGGAAGTATTTCCTTGCTAGGAAATTGTGCACATGAAATCAACAGTAAGTGTGATGAAGCTGCAAATGAACTATCACTAATTCAAGCATCCTTCTCAAGCCTGCAGCATGAAAAGCAGGAAATCAGGCGACAGAAAATGGAGGCTCTACATTGGCTTGAACGGTGGAAAAGTTGTGGACATGTTGGAGCAGATCACTGCGATGGGATCATTGGGTTTTCTGAAGAATTTCCAGAGCTGGCAGAATTTCCATTATCAGATCTTCAAAACGCTACGTGCAACTTTTCTGAGAGCTTCAAAGCTATGGAGGGTGGATATGGTTCTATTTACAAGGGAGAAATGTTGGGTAGAACAGTTGCTATAAGGAAGCTCCATTCACACAACATGCAAGGATCAATAGAGTTTCAGCAAGAGGTTCGAATTCTTGGTAGTCTCCAACACCCTAATCTAGTTACTTTGCTTGGTGTATGCCCTGAAGCCTGGTCATTTGTGTATGACTTCTATCCCAATGGAACTCTTCAAGATTACCTATTCCGAAAGGGAAGTCTTCTCCCTTTGACATGGAGTATCAGAGCACGATGGGTTTTTGAAATTGCTAGAGCTCTCTGCTTCCTACATTCTTCCAGACCTGAAACTATTGTCCACGGTGGTCTGACACTTGAAACTGTCCTTCTTGACACTGCACTTGGTTGCAAGATATGTGAATTTGGGTTCAGCAGGCTAGTGAAAGAGGAGTCACTTTCTCTTCCTAGTTTTCACTTGAGCACCGAGCCAAAGGGTCCTTTTTCATATACAGATCCCGAGCTTCAGAGAACTGGAGTACTAACACCTAAGTCTGACGTATACTCTTTTGGACTCATCATTTTGCAACTTCTCACTAGTAGGACTCCAGTTGGATTAGCTGGTGAAGTACGCAGAGCAGTTTCATGTGGAAAATTGTCTTCAATTTTGGATTCTTCAGCTGGAGAATGGAATTCCACCGTGGCAACACAATTGGCCGAACTGGGATTGCAATGCTGCCAACTGAACAGCAGAGACCGACCAGAATTAACACCTTCTCTAGTGAGGGAGTTGAAGCAGTTGTATGTTTCAGAAGAGCGACCAGTGCCATCTTTTTTCCTGTGTCCAATCTCTCAGGAAATAATGAATGATCCTCAAGTTGCAGCAGACGGATTTACTTATGAAAGGAAGGCCATAAGTGAATGGCTGGATAATGGGCACGAAACTTCACCTATGACTAATTTAAAGTTGAGTTACCTCCATCTCACTCCCAATCATGCGCTTCGACTTGCTATTCAAGGCTGGCTTTGCAAATCTTGA 1929 0.4199 MKIKRNSSKANFAAKNAPPFCEIWFVYKGKHIWTREASETHCFVSSHAQPETTTAESLSCRSLQYGTTELLHSECLQSNSARATRSTVPNVIIEAEATFSSKSSSCSSHCSPQHSEFEEETIDIHLIEAKAEANAATDVELLKCRRLEFKAIEAISKVNLFESAHAHEVKLRKEVEDAVRATIKEQRMFLEEKEKIASELERTTGSISLLGNCAHEINSKCDEAANELSLIQASFSSLQHEKQEIRRQKMEALHWLERWKSCGHVGADHCDGIIGFSEEFPELAEFPLSDLQNATCNFSESFKAMEGGYGSIYKGEMLGRTVAIRKLHSHNMQGSIEFQQEVRILGSLQHPNLVTLLGVCPEAWSFVYDFYPNGTLQDYLFRKGSLLPLTWSIRARWVFEIARALCFLHSSRPETIVHGGLTLETVLLDTALGCKICEFGFSRLVKEESLSLPSFHLSTEPKGPFSYTDPELQRTGVLTPKSDVYSFGLIILQLLTSRTPVGLAGEVRRAVSCGKLSSILDSSAGEWNSTVATQLAELGLQCCQLNSRDRPELTPSLVRELKQLYVSEERPVPSFFLCPISQEIMNDPQVAADGFTYERKAISEWLDNGHETSPMTNLKLSYLHLTPNHALRLAIQGWLCKS 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00031 642 PANTHER OS02G0152300 PROTEIN 6 636 - -
Vium6003g00031 642 SUPERFAMILY RING/U-box 569 641 - -
Vium6003g00031 642 Gene3D Transferase(Phosphotransferase) domain 1 371 571 - -
Vium6003g00031 642 ProSiteProfiles U-box domain profile. 571 642 IPR003613 GO:0004842|GO:0016567
Vium6003g00031 642 Gene3D Phosphorylase Kinase; domain 1 275 370 - -
Vium6003g00031 642 Pfam Protein tyrosine and serine/threonine kinase 306 554 IPR001245 GO:0004672|GO:0006468
Vium6003g00031 642 SMART Ubox_2 575 638 IPR003613 GO:0004842|GO:0016567
Vium6003g00031 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 572 642 IPR013083 -
Vium6003g00031 642 SUPERFAMILY Protein kinase-like (PK-like) 282 555 IPR011009 -
Vium6003g00031 642 ProSiteProfiles Protein kinase domain profile. 298 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6003g00031 642 CDD RING-Ubox_WDSUB1-like 573 628 - -
Vium6003g00031 642 Pfam U-box domain 572 641 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00031 Vium-Chr6003 189071 193335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00031 7 639 U-box Gene Family AT2G45910 35.119 2.82e-123 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium6003g00031 PK_Tyr_Ser-Thr 8.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00031 - - gmx:100799032 1064.68