Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00030 ATGGCCATGGATGAGTATGAATGTGATCAGAAGGTCCACGTGGCAGTTGGGAAGTCCCTTAAGAAAGGCACCACTTTGATTCGATGGTGTTTCACCCATTTCAGCAAAGCACAGATATGCTTACTTCATGTTTACCAACCTTCTACTATGATCCCTACACTGTTAGGAAAATTGCCAGCATCCCAAGCTAGTCCTGAAGTCGTGTCTGCTTATAGAATAGAGGAAAGAGAAGAGACCAAGAGGCTTCTAGAGAAGTACTCGAGCCTTTGCCGTGCAGCTAAGGTTAAGGTAAGCAGTGTCATTGGTGAAGCTGATCAAGTTCAGACAGGGATTGTGGATTTGGTTACTGTGCATAATATCAGGAAGCTTGTTATTGGAGCAATAACCCCAGAAAATTGCATGAAAATCAAAAGGAATTCTAGTAAAGCAAACTTTGCTGCGAAAAATGCTCCTCCATTCTGTGAAATATGGTTTGTCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAACTCATTGTTTTGTATCTTCCCATGCTCAACCTGAGACTACAACGGCAGAGAGTTTGAGTTGTAGATCTCTTCAATATGGTACAACTGAATTGCTCCATTCAGAATGTCTTCAATCAAATTCTGCAAGGGCTACAAGAAGTACAGTTCCGAATGTAATCATTGAAGCAGAAGCCACTTTTTCATCCAAATCATCCAGTTGTAGTAGTCATTGTTCTCCCCAACATTCAGAATTTGAGGAAGAAACAATAGATATTCATCTTATTGAAGCCAAAGCAGAAGCTAATGCTGCAACAGATGTGGAGCTGTTGAAGTGCAGAAGGTTGGAATTCAAAGCCATTGAGGCCATTAGTAAGGTGAACTTATTTGAATCTGCCCATGCACATGAAGTAAAGCTCAGAAAAGAGGTTGAGGATGCAGTGAGAGCTACAATAAAGGAGCAACGGATGTTTTTGGAGGAGAAAGAAAAAATTGCTAGTGAACTGGAAAGGACCACAGGAAGTATTTCCTTGCTAGGAAATTGTGCACATGAAATCAACAGTAAGTGTGATGAAGCTGCAAATGAACTATCACTAATTCAAGCATCCTTCTCAAGCCTGCAGCATGAAAAGCAGGAAATCAGGCGACAGAAAATGGAGGCTCTACATTGGCTTGAACGGTGGAAAAGTTGTGGACATGTTGGAGCAGATCACTGCGATGGGATCATTGGGTTTTCTGAAGAATTTCCAGAGCTGGCAGAATTTCCATTATCAGATCTTCAAAACGCTACGTGCAACTTTTCTGAGAGCTTCAAAGCTATGGAGGGTGGATATGGTTCTATTTACAAGGGAGAAATGTTGGGTAGAACAGTTGCTATAAGGAAGCTCCATTCACACAACATGCAAGGATCAATAGAGTTTCAGCAAGAGGTTCGAATTCTTGGTAGTCTCCAACACCCTAATCTAGTTACTTTGCTTGGTGTATGCCCTGAAGCCTGGTCATTTGTGTATGACTTCTATCCCAATGGAACTCTTCAAGATTACCTATTCCGAAAGGGAAGTCTTCTCCCTTTGACATGGAGTATCAGAGCACGATGGGTTTTTGAAATTGCTAGAGCTCTCTGCTTCCTACATTCTTCCAGACCTGAAACTATTGTCCACGGTGGTCTGACACTTGAAACTGTCCTTCTTGACACTGCACTTGGTTGCAAGATATGTGAATTTGGGTTCAGCAGGCTAGTGAAAGAGGAGTCACTTTCTCTTCCTAGTTTTCACTTGAGCACCGAGCCAAAGGGTCCTTTTTCATATACAGATCCCGAGCTTCAGAGAACTGGAGTACTAACACCTAAGTCTGACGTATACTCTTTTGGACTCATCATTTTGCAACTTCTCACTAGTAGGACTCCAGTTGGATTAGCTGGTGAAGTACGCAGAGCAGTTTCATGTGGAAAATTGTCTTCAATTTTGGATTCTTCAGCTGGAGAATGGAATTCCACCGTGGCAACACAATTGGCCGAACTGGGATTGCAATGCTGCCAACTGAACAGCAGAGACCGACCAGAATTAACACCTTCTCTAGTGAGGGAGTTGAAGCAGTTGTATGTTTCAGAAGAGCGACCAGTGCCATCTTTTTTCCTGTGTCCAATCTCTCAGGAAATAATGAATGATCCTCAAGTTGCAGCAGACGGATTTACTTATGAAAGGAAGGCCATAAGTGAATGGCTGGATAATGGGCACGAAACTTCACCTATGACTAATTTAAAGTTGAGTTACCTCCATCTCACTCCCAATCATGCGCTTCGACTTGCTATTCAAGGCTGGCTTTGCAAATCTTGA 2328 0.4235 MAMDEYECDQKVHVAVGKSLKKGTTLIRWCFTHFSKAQICLLHVYQPSTMIPTLLGKLPASQASPEVVSAYRIEEREETKRLLEKYSSLCRAAKVKVSSVIGEADQVQTGIVDLVTVHNIRKLVIGAITPENCMKIKRNSSKANFAAKNAPPFCEIWFVYKGKHIWTREASETHCFVSSHAQPETTTAESLSCRSLQYGTTELLHSECLQSNSARATRSTVPNVIIEAEATFSSKSSSCSSHCSPQHSEFEEETIDIHLIEAKAEANAATDVELLKCRRLEFKAIEAISKVNLFESAHAHEVKLRKEVEDAVRATIKEQRMFLEEKEKIASELERTTGSISLLGNCAHEINSKCDEAANELSLIQASFSSLQHEKQEIRRQKMEALHWLERWKSCGHVGADHCDGIIGFSEEFPELAEFPLSDLQNATCNFSESFKAMEGGYGSIYKGEMLGRTVAIRKLHSHNMQGSIEFQQEVRILGSLQHPNLVTLLGVCPEAWSFVYDFYPNGTLQDYLFRKGSLLPLTWSIRARWVFEIARALCFLHSSRPETIVHGGLTLETVLLDTALGCKICEFGFSRLVKEESLSLPSFHLSTEPKGPFSYTDPELQRTGVLTPKSDVYSFGLIILQLLTSRTPVGLAGEVRRAVSCGKLSSILDSSAGEWNSTVATQLAELGLQCCQLNSRDRPELTPSLVRELKQLYVSEERPVPSFFLCPISQEIMNDPQVAADGFTYERKAISEWLDNGHETSPMTNLKLSYLHLTPNHALRLAIQGWLCKS 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00030 775 SUPERFAMILY RING/U-box 702 774 - -
Vium6003g00030 775 Pfam Protein tyrosine and serine/threonine kinase 439 687 IPR001245 GO:0004672|GO:0006468
Vium6003g00030 775 SUPERFAMILY Protein kinase-like (PK-like) 415 688 IPR011009 -
Vium6003g00030 775 CDD RING-Ubox_WDSUB1-like 706 761 - -
Vium6003g00030 775 Gene3D Phosphorylase Kinase; domain 1 408 503 - -
Vium6003g00030 775 PANTHER OS02G0152300 PROTEIN 12 769 - -
Vium6003g00030 775 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 31 127 - -
Vium6003g00030 775 Gene3D Transferase(Phosphotransferase) domain 1 504 704 - -
Vium6003g00030 775 Gene3D HUPs 7 127 IPR014729 -
Vium6003g00030 775 ProSiteProfiles U-box domain profile. 704 775 IPR003613 GO:0004842|GO:0016567
Vium6003g00030 775 Pfam U-box domain 705 774 IPR003613 GO:0004842|GO:0016567
Vium6003g00030 775 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 775 IPR013083 -
Vium6003g00030 775 ProSiteProfiles Protein kinase domain profile. 431 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6003g00030 775 CDD STK_N 11 162 - -
Vium6003g00030 775 SMART Ubox_2 708 771 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00030 Vium-Chr6003 189071 193923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00030 9 772 U-box Gene Family AT2G45910 34.658 5.35e-152 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium6003g00030 PK_Tyr_Ser-Thr 1.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00030 - - gmx:100799032 1285.78