Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00028 ATGGGAAACGGCATAGGGAAGTTAACGGTGTGCTTCACCGGACATAACAGTGGGGGACGTCGGAAGCAGGATATATCCATTTTAATAACGGAGCCTCTGGACGAGGGTTTGGGTCACTCTTTCTGCTACGTTAGACCCGACCCGACCCGGATATCGTCATCGAAGGTGCACTCGGAGGAAACAACGACGTTCAGAACAATCTCTGGGGCTTCGGTGAGCGCTAACACATCGACGCCGTTATCGACGGCGTTCGTGGACTTGTACTCCTACGGTTGCATAGACCGAGCGGCGGCGTTCGAGAGTTCAACGTCGTTCGCGTCGCTTCCTCTGCAACCGATTCCGCGGAACCTGGTGAACTCAGGGCCCTTCTCGGGGAACCTGGGCGGTGGTGGGTTTCCGGGCTCGGGCCCGCTAGAGAGGGGTTTCATGTCGGGCCCCATCGAGCGCGGGTTCATGTCGGGGCCCATCGATCGTGGACTTTTTTCGGGGCCGATGGAGAGGGAGGGAAACGGATCGGATCATTTCCCGAGAAGCTTCTCGCACGGAGGGATGGGTTTAGGGTTGGGATTAGGTTTGAGAGTGAGAACGAGGAAGGGTCGGTGGATTCGTGTTTTGCAGAGGGCGATTTCGAAGACTCTCTCTCGTGGGCAGAACTCGATTGTGGCTCCGATCAAAGGAGTGGTGGTAAAAGAGCCGGAGTGGATGGTGGCTGCGGCGGAGAAGCATAATGAGAATCTGAGTGTGAATTTGAGCAGTGAGGGGAGCTTGGAGGACGATGATTCTATGGAGAGTCAGAATCTTCAGTGGGCTCAGGGGAAAGCAGGGGAAGATCGTGTCCATGTTGTTGTGTCTGAGGAACACGGCTGGGTTTTCGTGGGGATCTATGATGGTTTCAATGGACCCGATGCTCCTGATTACCTTCTCTCGAATCTCTACACCGCGGTGCACAAGGAGCTGAAAGGGTTGTTGTGGGATGATGGGTCTACCCAGGAAAATTCGACACCTAAAGAGGAGGTGTTGCGGGATGTCACAGACGTTGCAGATGTAGATGCATGCTCTCACTGTGTTGAACATGAAAATAGTAACTGTAATAAGAGTACTAGTAAGAAAGGTAGGAATTCGAGGAACAGGTACAAAGGTGCTGCGAATAAGTGGGAGGAGAATCAACGGAGGTGGAAGTGTGAGTGGGATAGGGAGAGGTTAGAGCTTGATCGGAGATTAAAGGAGCAACTGAATTCAAGTCGATCAGGATGTGGTGGAGCAGCAAGTTCAATTAATCATGCGGATGTTTTGGAAGCTCTTTCTCGGGCTCTGAGGAAGACTGAGGAGTCTTACCTTGATGTTGCGGATAAGATGGTGATGGAGAATCCTGAACTTGCCTTGATGGGTTCTTGTGTTCTTGTGATGTTGATGAAGGGGGAGGATGTTTACGTGATGAATGTGGGGGATAGCCGCGCTGTGCTGGCTCAGAAGGCTGAGCCTGATTATTGGCTCGGCAAGATCAGGCAGGACTTGGAGAGGATCAATGAGGAGACGATGAATGATCTTGAATCTTGGGATGTTGATAACTCCAATTTGGTTCCAAGTCTTAGTGCGATTCAGCTTACTAAAGATCATAGTACAAGTGTTGAAGAAGAAATCCAGAGAATTAAAAAGGAGCACCCAGATGATCCTTGTGCTGTTGTAAATGACCGTGTTAAGGGTTCTCTCAAGGTTACCCGAGCCTTTGGTGCCGGATTTCTCAAACAGCCCAAGTGGAACAACGCACTTCTGGAGATGTTTAGAATAGACTACGTGGGAAACTCTCCTTACATCAGCTGCCTACCATATCTAAAGCACCACAGATTAGGTCCAAAGGACAAATTTTTGATTCTATGCTCCGATGGGCTCTATCAGTACTTGTCAAACGAAGAAGCAGTGGCTGAAGTTGAGCATTTCATCACATTGCAACCTGAGGGAGACCCAGCTCAGCATTTGGTCGAAGAAGTGTTATTTCGTGCTGCAAAGAAAGCTGGGTTGGTCTTTCACGAGTTGCTCGAAATTCCACAGGGTGATAGGCGCCGTTACCATGATGATGTTTCCATCATTGTTATTTCTTTGGAAGGAAGAATATGGAGATCCTGTGTATAA 2130 0.4991 MGNGIGKLTVCFTGHNSGGRRKQDISILITEPLDEGLGHSFCYVRPDPTRISSSKVHSEETTTFRTISGASVSANTSTPLSTAFVDLYSYGCIDRAAAFESSTSFASLPLQPIPRNLVNSGPFSGNLGGGGFPGSGPLERGFMSGPIERGFMSGPIDRGLFSGPMEREGNGSDHFPRSFSHGGMGLGLGLGLRVRTRKGRWIRVLQRAISKTLSRGQNSIVAPIKGVVVKEPEWMVAAAEKHNENLSVNLSSEGSLEDDDSMESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYTAVHKELKGLLWDDGSTQENSTPKEEVLRDVTDVADVDACSHCVEHENSNCNKSTSKKGRNSRNRYKGAANKWEENQRRWKCEWDRERLELDRRLKEQLNSSRSGCGGAASSINHADVLEALSRALRKTEESYLDVADKMVMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERINEETMNDLESWDVDNSNLVPSLSAIQLTKDHSTSVEEEIQRIKKEHPDDPCAVVNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGNSPYISCLPYLKHHRLGPKDKFLILCSDGLYQYLSNEEAVAEVEHFITLQPEGDPAQHLVEEVLFRAAKKAGLVFHELLEIPQGDRRRYHDDVSIIVISLEGRIWRSCV 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00028 709 Pfam Protein phosphatase 2C 421 656 IPR001932 -
Vium6003g00028 709 ProSiteProfiles PPM-type phosphatase domain profile. 259 700 IPR001932 -
Vium6003g00028 709 PANTHER PROTEIN PHOSPHATASE 2C 255 698 IPR015655 GO:0004722|GO:0006470
Vium6003g00028 709 Gene3D - 237 705 IPR036457 -
Vium6003g00028 709 SMART PP2C_4 260 698 IPR001932 -
Vium6003g00028 709 SUPERFAMILY PP2C-like 273 701 IPR036457 -
Vium6003g00028 709 CDD PP2Cc 423 700 IPR001932 -
Vium6003g00028 709 FunFam probable protein phosphatase 2C 4 237 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00028 Vium-Chr6003 179976 183447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00028 1 709 PP2C-type Phosphatase Gene Family AT1G07630 67.545 0.0 925
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00028 - - pvu:PHAVU_011G064200g 1300.8