Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00025 ATGGGAGTTTGTTTGAGCACCAAAACTAAAACTGGGTTAAACTCAAAGAATGTGAGTGCCTATGCCAAAGATTTCAGCAGTCCAAGTAGTAAAGTTATAAAAGAACTCAGTAGCACAATTAGTAAGGTCTCAGAGGTTTCTGTGCCTCAGACTCTTCAGAGTGAGGGTGAGATCTTGCATCCATCCAATCTAAAGAGCTTTAGTTTGACAGAACTTACAGCTGCCACAAGAAATTTCCGTAAGGACAGTGTATTAGGAGAGGGTGGTTTGGGATCGGTTTTTAAGGGTTGGATTGATGATCACTCACTTTCTGCAACCAAACCTGGCACTGGGATTGTTGTTGCTGTGAAAAGACTTAGCCAAGACAGTTTCCAATGTCACGAGGAGTGGTTGGCAAGGCAGGGTATGACTCAGGAAGAAAGTCTCAAGGATGAAGTAAACTGTCTAGGGCAGCTTTCTCATCCTCATCTAGTGAAATTAATTGGATATTGCTTTGAAGATAGAGACCGTCTTCTGGTATATGAATTTATGCCTCGTGGTAGCTTGGAGAATCACTTGTTCATGAGAGGCTCATATTTTCAACCTCTTTCTTGGGGCCTGCGTTTGAAAGTCGCTCTTGGTGCTGCCAAAGGGCTTGCATTTCTTCACAGTGCTGAAACAAAAGTGATATATAAAGATTTCAAGACCTCAAATGTCTTGCTGGATTCACATTACAATGCAAAGCTTGCTGATTTGGGGCTCTCGATGGAAGCACCTACACGTGACAAAAGTCGTGTCTCCAGTAGAATAATGGGAACCTATGGATATGCAGCTCCAGAATATCTAGCCACAGGTCATGTGAGTGCTAAGAGTGATGTCTTCAGTTTTGGAGTTGTTCTGCTAGAACTGTTATCTGGTAGGAGGGCTGTGGACAAGAACAGACCATCAGGGCAGCACAATTTGGTGGAATGGGCAAAGCCATACATGGCAAACAAGAGAAAGCTTCTGCGTGTGTTGGACAACCGTCTTGAAGGTCAATATGACATAGATGAAGCTTTTAAGGTAGCTACCCTCTGTCTGCGATGCCTTGCAACAGAATCCAAGTTGAGACCAAACATGGACGAAGTTGTCACAGATTTGGAGCACCTGCAGGTTCCGCATGTGCATCATAATCGTTCTGTGAATACCTCTCGTAGTCGTAGGAAAAGTGCTGATGATTTAACTAATGGTAGAAGCGCTAAAGCTTCACTTTCGCCTCTCTCACATGACATTGCAAATACACGTCCTTGA 1269 0.4366 MGVCLSTKTKTGLNSKNVSAYAKDFSSPSSKVIKELSSTISKVSEVSVPQTLQSEGEILHPSNLKSFSLTELTAATRNFRKDSVLGEGGLGSVFKGWIDDHSLSATKPGTGIVVAVKRLSQDSFQCHEEWLARQGMTQEESLKDEVNCLGQLSHPHLVKLIGYCFEDRDRLLVYEFMPRGSLENHLFMRGSYFQPLSWGLRLKVALGAAKGLAFLHSAETKVIYKDFKTSNVLLDSHYNAKLADLGLSMEAPTRDKSRVSSRIMGTYGYAAPEYLATGHVSAKSDVFSFGVVLLELLSGRRAVDKNRPSGQHNLVEWAKPYMANKRKLLRVLDNRLEGQYDIDEAFKVATLCLRCLATESKLRPNMDEVVTDLEHLQVPHVHHNRSVNTSRSRRKSADDLTNGRSAKASLSPLSHDIANTRP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00025 422 FunFam Serine/threonine-protein kinase BIK1 46 176 - -
Vium6003g00025 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Vium6003g00025 422 ProSiteProfiles Protein kinase domain profile. 79 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6003g00025 422 MobiDBLite consensus disorder prediction 402 422 - -
Vium6003g00025 422 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 177 387 - -
Vium6003g00025 422 MobiDBLite consensus disorder prediction 380 422 - -
Vium6003g00025 422 Gene3D Phosphorylase Kinase; domain 1 49 176 - -
Vium6003g00025 422 SUPERFAMILY Protein kinase-like (PK-like) 63 382 IPR011009 -
Vium6003g00025 422 PANTHER OS01G0588500 PROTEIN-RELATED 39 377 - -
Vium6003g00025 422 Pfam Protein tyrosine and serine/threonine kinase 82 373 IPR001245 GO:0004672|GO:0006468
Vium6003g00025 422 Gene3D Transferase(Phosphotransferase) domain 1 177 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00025 Vium-Chr6003 146363 149257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00025 65 380 Glycoside Hydrolase AT3G07070 45.122 4.10e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium6003g00025 PK_Tyr_Ser-Thr 9.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00025 - - vun:114169806 738.028