Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00024 ATGAAGTGCTTCTACTTCTCCAACGCAGAGGACGAAGATTGCGTGGCAGCGGCACCGAGTTCGCGCGGTTCCACTTCGCGTGTGTCGTGGGCGCGTTCGCTCAGTCTCATGGACACGCGCAGCCGCTCCAACTTCGACTCCGACTCCACGGAATTCTCCGATACGGTGGACTTCCATCACTTCCTGGTGCAGCGCCGGGCCAACGACCTCCGCATCTTCCCATTCTCAGCGCTGAAGTTTGCCACGCGCGGGTTCAACCGCGCCCTCCTAGTTGGCGAGGGGGGGTTTGGGTCCGTGTACCGCGGCGTGGTGGAGGAAAAGGAGGTGGCGATCAAGCAGCTGAACCGCAACGGGCAGCAGGGGCACAAGGAGTGGATCAACGAGGTGAATTTGTTGGGAGTGGTGAAGCATCCTAATCTGGTGCGGTTGGTAGGGTACTGCGCTGAGGACGATGAAAGAGGGATCCAGAGGCTTCTGGTTTATGAGTTTATGCCGAATAAGAGCTTGGAGGAGCATCTCTTGGCACGAGTCCCTTCCACGGTTCTGCCTTGGGGGACCAGGTTGAGGATTGCGCAAGATGCGGCTCGCGGTTTGGCTTATCTTCACGAAGAAATGGATTTTCAGCTAATATTTCGGGATTTTAAGACGTCCAACATCCTGCTGGATGAAAACTTCAATGCAAAGCTTTCTGATTTTGGACTGGCTAGGCAAGGACCTTCAGAAGGGTCCGGCTATGTTTCAACAGCAGTTGTTGGCACCATAGGTTATGCTGCACCAGAGTATGTTCAGACTGGTAAGCTAACTGCTAAGAGTGATGTGTGGAGCTTTGGTGTAGTTCTTTACGAGCTTATCACTGGGAGGAGAGCTGTAGAGAGAAACCTACCTAAAAATGAACAGAAGCTTTTAGAGTGGGTTAGATCTTATGTTTCTGATCCTAGGAAGTTCCATCATATTGTAGACCCTCGACTTAAGGGGCAATACTGCATCAAATCAGCCCATAAACTTGCAATCCTGGCAAACAAATGCCTCACAAAACAGCCGAAGTCTCGCCCAAAAATGAGTGAGGTGGTTGAGTCTCTTGGAATCATTATTATTGAGACAGATACTCGGGATGAAGGGTTTCCCCAAGCTGCTGTAACCGCTAGAGAAGAAAAAGAAGTAGAGGAAACTGAACCTGAACCAGCGAAACAAGGGAACAATTACCTGAAGAAGGTTTTTGAATTCAAAGACATGGTCAGCTTAAGAAACAAGTCTATTGGAAGGTTGGATTGGAAAAGTTGGGCGCCTGGGCTAGTAAGAAGCTGGTGA 1308 0.5046 MKCFYFSNAEDEDCVAAAPSSRGSTSRVSWARSLSLMDTRSRSNFDSDSTEFSDTVDFHHFLVQRRANDLRIFPFSALKFATRGFNRALLVGEGGFGSVYRGVVEEKEVAIKQLNRNGQQGHKEWINEVNLLGVVKHPNLVRLVGYCAEDDERGIQRLLVYEFMPNKSLEEHLLARVPSTVLPWGTRLRIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDENFNAKLSDFGLARQGPSEGSGYVSTAVVGTIGYAAPEYVQTGKLTAKSDVWSFGVVLYELITGRRAVERNLPKNEQKLLEWVRSYVSDPRKFHHIVDPRLKGQYCIKSAHKLAILANKCLTKQPKSRPKMSEVVESLGIIIIETDTRDEGFPQAAVTAREEKEVEETEPEPAKQGNNYLKKVFEFKDMVSLRNKSIGRLDWKSWAPGLVRSW 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00024 435 Gene3D Transferase(Phosphotransferase) domain 1 164 380 - -
Vium6003g00024 435 Pfam Protein kinase domain 90 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6003g00024 435 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 164 372 - -
Vium6003g00024 435 PANTHER OS01G0588500 PROTEIN-RELATED 50 361 - -
Vium6003g00024 435 SUPERFAMILY Protein kinase-like (PK-like) 68 360 IPR011009 -
Vium6003g00024 435 ProSitePatterns Protein kinases ATP-binding region signature. 91 112 IPR017441 GO:0005524
Vium6003g00024 435 CDD STKc_IRAK 91 363 - -
Vium6003g00024 435 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 59 163 - -
Vium6003g00024 435 ProSiteProfiles Protein kinase domain profile. 85 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6003g00024 435 Gene3D Phosphorylase Kinase; domain 1 63 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00024 Vium-Chr6003 138808 141460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00024 71 368 Glycoside Hydrolase AT3G07070 49.834 3.71e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium6003g00024 Pkinase 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00024 - - gmx:100305425 744.577