Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00023 ATGACTATTTTCAACTTCCACACAAGAAAAATGGCAGTGCCAAGCATTTTGCTCTGCATTGTGCTTATCATCTCCTTAACATGGATGGTCGAAGCACGCATTCCGGGGATTTACGCCGGCGGTGCATGGGAAAGTGCTCACGCAACCTTCTACGGAGGATCCGATGCTTCCGGCACCATGGGTGGAGCGTGTGGGTACGGGAACCTGTACAGCCAAGGCTACGGTGTGAACACGGCGGCATTAAGCACGGCGCTTTTCAACAATGGCCTCAGCTGCGGCGCGTGCTTTGAGATAAAGTGCGCTAACGACAGACAGTGGTGTCACTCGGGAAGTCCTTCCATCTTCATCACAGCAACAAACTTTTGCCCTCCCAACTACGCTCTTCCAAACGACAATGGCGGCTGGTGCAACCCTCCTCGTCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATTGCCGAATACCGAGCCGGAATTGTCCCTGTTGCCTTTCGCCGAGTGCCATGTAGAAAGCACGGAGGGATAAGGTTCACCGTCAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTGGCAGGTGCGGGGGATATCGTGCGCACTTACGTGAAGGGGTCCCGAACCGGGTGGATGCCAATGAGCCGAAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGGCAGACGCTGTCGTTTCGCGTGACGGGCAGCGACCGCCGCACCTCCACCTCGTGGAACATCGCTCCAGCCAATTGGCAATTCGGTCAAACTTTCATCGGAAAAAACTTCCGAGTCTGA 810 0.5469 MTIFNFHTRKMAVPSILLCIVLIISLTWMVEARIPGIYAGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKHGGIRFTVNGFRYFNLVLISNVAGAGDIVRTYVKGSRTGWMPMSRNWGQNWQSNAVLVGQTLSFRVTGSDRRTSTSWNIAPANWQFGQTFIGKNFRV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00023 269 FunFam Expansin 175 267 - -
Vium6003g00023 269 CDD DPBB_EXPA_N 43 170 - -
Vium6003g00023 269 SMART dpbb_1 78 165 IPR007112 -
Vium6003g00023 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 175 IPR007112 -
Vium6003g00023 269 SUPERFAMILY Barwin-like endoglucanases 21 193 IPR036908 -
Vium6003g00023 269 Gene3D - 32 171 IPR036908 -
Vium6003g00023 269 FunFam Expansin 32 171 - -
Vium6003g00023 269 Pfam Expansin C-terminal domain 176 253 IPR007117 -
Vium6003g00023 269 SUPERFAMILY PHL pollen allergen 172 263 IPR036749 -
Vium6003g00023 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 264 IPR007117 -
Vium6003g00023 269 PANTHER EXPANSIN-A15 27 267 IPR002963 GO:0009664
Vium6003g00023 269 Pfam Lytic transglycolase 78 164 IPR009009 -
Vium6003g00023 269 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Vium6003g00023 269 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Vium6003g00023 269 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Vium6003g00023 269 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Vium6003g00023 269 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Vium6003g00023 269 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576
Vium6003g00023 269 Gene3D - 175 267 IPR036749 -
Vium6003g00023 269 PRINTS Expansin signature 174 186 IPR002963 GO:0009664
Vium6003g00023 269 PRINTS Expansin signature 186 207 IPR002963 GO:0009664
Vium6003g00023 269 PRINTS Expansin signature 221 242 IPR002963 GO:0009664
Vium6003g00023 269 PRINTS Expansin signature 114 124 IPR002963 GO:0009664
Vium6003g00023 269 PRINTS Expansin signature 133 150 IPR002963 GO:0009664
Vium6003g00023 269 PRINTS Expansin signature 250 266 IPR002963 GO:0009664
Vium6003g00023 269 PRINTS Expansin signature 73 87 IPR002963 GO:0009664
Vium6003g00023 269 PRINTS Expansin signature 100 111 IPR002963 GO:0009664
Vium6003g00023 269 PRINTS Expansin signature 150 163 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00023 Vium-Chr6003 119098 120670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00023 15 269 Expansin Gene Family AT2G39700 83.529 7.90e-163 450