Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00015 ATGGATCCACGTTTCGAGTCCAATTTCATCAACGGTTTTAAACCTAACAACCAAGTGTCCAACACGGTTGTTGTAGAGGATCAGTTCCTTGTCCCTGTTAATGGGATGATGAGACCCTTTGAGTTTGGATTCGGGGATAACTCGTTAATTCTTCCACCTGATCCAAACGTTGCTCAGAACCATGTTTCCTTTGCCACCGACGAGGAGTGTCCACTGGACGAGATTGATTTTTCTGCTACTGTCTTACGTTACATAAACCAAATGCTTATGGAAGAGGACTTGGAGGCGAAGTCGTGTATGTTTCATGATTCCTTGGCTCTCCAAGCTGCTGAGAAATCGTTCTATGAGGCCATTGGTGAGACACACCCTTCTTTAGTAAAAACCCATCACAACGTAGACAGCCCTGAGGACAGTAGTTTCAGTGATTATGGCAGCAGTGGTACAACCACTAGTAATGGTAACTCGATTGAGTCTCATTGGGGTAACGTTGATCTTACTGACTATAAGCCTTCTATACTGCAAACCACTTTTCCCACTGACTTTGTTTTCCAGGCCACTTCAATCCAATCTTCTATGAACACCACAAGCAACTTCAGTGTTACCGATAGTGGATTCTTGCATAGTTCTACTGCGGCTGGAATTTTGGATCCAACCTTGTTTAGCAAGAGTGAATCTGTTCTGCAATTTGAGAGGGGTGTGGAGGAAGCCAACAAGTTCCTACCTAAAGGGAATCCTTTGGTTGTTGACTTGGAGAAACCCTCTTTGAGGATGGTTCCACATATCCAAGAGGAAATTAAGGTAGAGAGAGATGAAATTTTTGCTGAGTTAAGAGGAAGGAAGAATCACGGGCGGGAAGATGAAGAAGCAGATTCGCAAGATGGGAGAAGCAACAAGCAGTCTGCTGTGTACATTGATGACAGTGAGATATCAGAATTGCTTGATAAGGTTCTGCTGGGCACTGGATGCAGAAAGGAGCCAGCTCCTTTGTGTATTTGTTACGCAGACCTTCCTAATGGAGCATCCTCGAGTGCACAGAAGAAATTAGAAGAAACAAACAAGTCTGGTGGTGGGAAGAGCCGTGTTAAGAAGCAAGGCAACACAAAAGGAGTTGTGGATCTGAGGACATTGTTGATTCTATGTGCACAAGCTGTTTCTTCTGATGATCGTGTGTCTGCTAATGAATTGCTGAAGAAGATAAGGCAACATACTTCTCCGCTGGGTGAGGGGACTCAGAGGCTGGCCCATTGCTTTGCAAATGCTCTTGAAGCACGTTTGGCTGGGACAGGCACTCAGATTTATACTGCTTTATCATACAAAAGAAACTCTGCAGCAGACATGGTGAAAGCTTACCAAATGTATATTTCGGCTTGTCCATTCAAGAAGCTATCTATCATTTTTGCAAACCATACAATTTTGCAGCTAGCCATGGAAGTTGAATCTCTTCATATTATAGACTTTGGCATCCGTTATGGCTTCCAATGGCCAGCTCTTATTTATCGTCTATCAAAACGACTTGGGGGACCTCCCAAGCTGCGGATAACAGGGATAGAACTCCCACAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAGCAGACGGGACGTCGCCTTGCAAGATACTGTGATCGGTTTAAAGTTCCATTTGAGTTCAATGCCATTGCACAGAAATGGGAAACCATCAGAGTTGAGGACTTGAAGATAAAGGAAAATGAACTTCTTGCAGTGAATACTATGTTTAGATTTCAGAATCTACTTGATGAGACAGTTGTGTTGAATAGTCCCCGGGATGCTGTTTTAAGTTTAATAAGGAAGGCAAATCCCACTATCTTTATACATGGTACTGTCAATGGGAGCTACAATGCTCCATTCTTTGTAACACGGTTCCGGGAGGCCCTTTTCCATTATTCTACTTTGTTTGATGTGCTTGATACTAATGTGAGTCGTGAAGATCCAATGAGGTTGATGTTTGAGAAAGAGTTCTTTGGTCGGAGGGTAATGAATGCTTTAGCTTGTGAGGGTTGTGAGAGGGTTGAGAGACCCGAGACATACAAGCAATGGCAGGTTAGGAACATGAGAGCTGGATTTAGGCAACTGCCCTTGGATAAACATCTCATCAACAAATTAAGATCCAAGTTGAAAGATATTTACCATAGTGATTTCATGCTTCTTGAAGATGCCAACTTTATGCTGCAAGGTTGGAAGGGCAGAGTAGTTTATGCTTCATCTTGTTGGGTGCCTGCATAG 2241 0.4355 MDPRFESNFINGFKPNNQVSNTVVVEDQFLVPVNGMMRPFEFGFGDNSLILPPDPNVAQNHVSFATDEECPLDEIDFSATVLRYINQMLMEEDLEAKSCMFHDSLALQAAEKSFYEAIGETHPSLVKTHHNVDSPEDSSFSDYGSSGTTTSNGNSIESHWGNVDLTDYKPSILQTTFPTDFVFQATSIQSSMNTTSNFSVTDSGFLHSSTAAGILDPTLFSKSESVLQFERGVEEANKFLPKGNPLVVDLEKPSLRMVPHIQEEIKVERDEIFAELRGRKNHGREDEEADSQDGRSNKQSAVYIDDSEISELLDKVLLGTGCRKEPAPLCICYADLPNGASSSAQKKLEETNKSGGGKSRVKKQGNTKGVVDLRTLLILCAQAVSSDDRVSANELLKKIRQHTSPLGEGTQRLAHCFANALEARLAGTGTQIYTALSYKRNSAADMVKAYQMYISACPFKKLSIIFANHTILQLAMEVESLHIIDFGIRYGFQWPALIYRLSKRLGGPPKLRITGIELPQPGFRPAERVQQTGRRLARYCDRFKVPFEFNAIAQKWETIRVEDLKIKENELLAVNTMFRFQNLLDETVVLNSPRDAVLSLIRKANPTIFIHGTVNGSYNAPFFVTRFREALFHYSTLFDVLDTNVSREDPMRLMFEKEFFGRRVMNALACEGCERVERPETYKQWQVRNMRAGFRQLPLDKHLINKLRSKLKDIYHSDFMLLEDANFMLQGWKGRVVYASSCWVPA 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00015 746 MobiDBLite consensus disorder prediction 129 156 - -
Vium6003g00015 746 MobiDBLite consensus disorder prediction 277 300 - -
Vium6003g00015 746 MobiDBLite consensus disorder prediction 277 294 - -
Vium6003g00015 746 MobiDBLite consensus disorder prediction 137 156 - -
Vium6003g00015 746 ProSiteProfiles GRAS family profile. 364 744 IPR005202 -
Vium6003g00015 746 MobiDBLite consensus disorder prediction 344 365 - -
Vium6003g00015 746 Pfam GRAS domain family 373 743 IPR005202 -
Vium6003g00015 746 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 298 737 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00015 Vium-Chr6003 69636 72874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00015 81 746 GRAS Transcription Factor Family AT1G07530 54.290 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium6003g00015 GRAS 5.9e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00015 - - gmx:100815586 1205.28