Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00014 ATGGAGCACCCAAACTTCTTCTTCGGTGAAGAAGAGGATGACATGGCCCATCTCACAGACCCGCTTGTTTTTCCGACTTTGGATCCTTCTTCCAGAGACCCTTCGCTCGAAGACAACGACTTCTCAGAAACTGCAAAGTTCATCAGCCAGATCCTCATGGAAGAGAACGTCGAACACAAGCCATTCTACGACTCACTCACCTTGCAAGTTACCGAGAAATCCTTCTACGACGCTCTCGCCGGTAACCTACCTCCTTCCCCCAATCAACACCCCCTTGCTTTCAGTCCTGAAGCTGAAACCACCACCACCACCACCACCGCCAGCACCAGCAGCAACAGCAGTAACAACAATTTTTCAGATGAAAATTCCAGTGAGTTGAAGCTTCCTTCTCCAGATTCTGTTTTTAAGTTTAACTCCCGCGCCCTTTCTCAACCGTCTCCCTCAATTACCGCCAACCATGGACTCCAAGATTTGGATTTTTCTATTGCCAAACTCTTATCACAGAATATTTTCAATGATGTGGACTCCGTTTCCCAGTTTAGGCGGGGCCTGGAGGAAGCTAGCAAGTTTCTTCCTCCGGGACCTAACCTTGTGACTGGTCTAGGTTCAAACGGAGAACAAGCGTTCAATAAGTTTGGAGATACCTCGTATGGGTTGAGTGGGAAAAATCACAAGAGGGACGAGAGATACGCTATAGAGGAGGAAGAAGAAGAAGAAGGGAGAAGTAACAAGCAGACAGCACTTTCCCATGTCGATGAAAGTGACTTGTCTGATGCTTTCGATCGGGTGTTGCTTCATGAGGGAAACATGTGTAGCCAAATCAATTCTTTGCCAGGTGGAGCAGTGAAGGTTGATGAAGCAGATGGAGGGAAGAGTCGTTCAAGGAAAAAAGAGAGGAACAAGGAAACAGTTGATTTGAGGAATCTTTTGCTGATGTGCTCTCAATCTGTCTATGCCAATGACAACAGGACGGCCAATGAATTGCTAAAGCAGATTAGGCAACACTCTTCTCCCTTTGGAGATGCATCACAGAGGTTGGCTCATTACTTTGCCAACGGCCTTGAGGCACGCTTGGTTGGGGATGGTACAGTTGCACAGGGCATGTATTCTTTTCTGACCTCTAAGAGGAGCTCTGCTGCTGAGTTTCTCAAGGCATACCAGGTTTTCCTTTCCGCTTCCCCTTTCAAGAAGTTTACATATTTCTTTGCGAATAAAATGATTATGAAAGCAGCTGCAAAGGCAGAAACCATCCATATTATTGATTTTGGCATCCTATATGGTTTCCACTGGCCAATTCTTATTAAGTTTTTATCAGATAGAGAAGGTGGTCCTCCCAAACTGAGGATCACAGGGATAGAGTTTCCCCAACCAGGCTTTCGTCCCTCTGAAAGGATTGAGGAGACGGGTCACCGTCTTGCTAACTATTGTAAGCGTTACAAGGTTCCCTTTGAATACCATGCCATAGCATCAAGGAACTGGGAAACTATTCAGGTGGAAGCCCTTAAAATTGAGAGCAATGAGTTTGTTGCTGTCAATTGTCATATGAGGTTTGAGAATTTACTGGATGAGTCTATTGAAGTGGACAGTCCTAGGAATGCAGTCTTGCATTTGATCAAGAAGATAAATCCAAATATTTTTACTCAGTCCATCACTAATGGATCATATAATGCCCCCTTCTTTGCCACAAGATTTAGGGAGGCTTTGTTTCATTATTCTGCTATTTATGATATGTGTGACACTGTCATGCCTCGAGAAAACGAATGGAGGTTGATGATTGAGAGAGAGCTTTTGGGCCGGGAGGCTATGAATGTTATAGCATGCGAAGGTTCTGAGAGAATTGAAAGGCCCGAGACATACAAACAATGGCAGGCTAGGAATACAAGGGCTGGCTTCAAGCAGCTCCCACTGAATCCGGAATTGATGACCAAGTTTAGGACCAAGTTAAAGGAATGGTACCACAGAGATTTTGTCTTTGATGAAGATAACAATTGGATGCTTCAAGGTTGGAAGGGCCGCATTTTGTATGCTTCCACTTGTTGGGTGCCCGCATAA 2052 0.4508 MEHPNFFFGEEEDDMAHLTDPLVFPTLDPSSRDPSLEDNDFSETAKFISQILMEENVEHKPFYDSLTLQVTEKSFYDALAGNLPPSPNQHPLAFSPEAETTTTTTTASTSSNSSNNNFSDENSSELKLPSPDSVFKFNSRALSQPSPSITANHGLQDLDFSIAKLLSQNIFNDVDSVSQFRRGLEEASKFLPPGPNLVTGLGSNGEQAFNKFGDTSYGLSGKNHKRDERYAIEEEEEEEGRSNKQTALSHVDESDLSDAFDRVLLHEGNMCSQINSLPGGAVKVDEADGGKSRSRKKERNKETVDLRNLLLMCSQSVYANDNRTANELLKQIRQHSSPFGDASQRLAHYFANGLEARLVGDGTVAQGMYSFLTSKRSSAAEFLKAYQVFLSASPFKKFTYFFANKMIMKAAAKAETIHIIDFGILYGFHWPILIKFLSDREGGPPKLRITGIEFPQPGFRPSERIEETGHRLANYCKRYKVPFEYHAIASRNWETIQVEALKIESNEFVAVNCHMRFENLLDESIEVDSPRNAVLHLIKKINPNIFTQSITNGSYNAPFFATRFREALFHYSAIYDMCDTVMPRENEWRLMIERELLGREAMNVIACEGSERIERPETYKQWQARNTRAGFKQLPLNPELMTKFRTKLKEWYHRDFVFDEDNNWMLQGWKGRILYASTCWVPA 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00014 683 ProSiteProfiles GRAS family profile. 297 681 IPR005202 -
Vium6003g00014 683 MobiDBLite consensus disorder prediction 277 301 - -
Vium6003g00014 683 MobiDBLite consensus disorder prediction 232 248 - -
Vium6003g00014 683 MobiDBLite consensus disorder prediction 232 253 - -
Vium6003g00014 683 MobiDBLite consensus disorder prediction 286 301 - -
Vium6003g00014 683 Pfam GRAS domain family 306 680 IPR005202 -
Vium6003g00014 683 MobiDBLite consensus disorder prediction 93 127 - -
Vium6003g00014 683 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 238 676 IPR005202 -
Vium6003g00014 683 MobiDBLite consensus disorder prediction 86 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00014 Vium-Chr6003 65401 68339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00014 46 683 GRAS Transcription Factor Family AT1G07530 48.121 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium6003g00014 GRAS 8.6e-116 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00014 - - gmx:100795855 1010.36