Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00013 ATGGAGCCCAACTTTCTCAGCGATGACCTGTTTGATGAATCGGAGAGCATATCATACCTCTCAGAATCACTTGGTTTTGCTAGAATGGATCCTCCACCGGAAGACAACGACTTCTCAGAAACCGTCAAGTTCATAAGCCAGATCCTCATGGAAGAGAACGTTCAGCTACAGAATCCATTCTATGATTCACTCACCTTGCAGGTTACCGAGAAGTCCTTCTATGATACTCTAGTGGGTAACCTTTCCCCTAATCAACACGCCCTTGTTCTCAGCCCCCAAGCTGAAACCACCACCACCACCACCAATAACAACAACAGCAGCTTTTTAGATGAATATTTCCCTTCTCCGGATTCTGCTTCTGCTTCTGCTTCTGCTCTTCAGTTTAACCCCCACACCCTTTCTCAGCCACCTTCATTTACTGTTTGTCATGGATTCTCAGATTTGGATTCTTCTATCGCAAAAATCTTGGCACAGAATATGTTCAATGATGCTGATTCTGTTTCCCAGTTCAGGAGAGGATTAGAGGAAGCTACCAAGTTTCTTCCTTTTGGCCCTGAGCTTGTAACTGGTCTCCATTCAAACGGTGAGGAACAGATCAATAATTTTGGAGTTAATTTCAAGAGCAGAAAGAATCACGAGCGTCAAGAGAGAGATACCACAGAAGAAGAAGAAGGGAGAAGTAGTAAGCAATCGACACTTAGCCTTGTTGATGAGAGTGACATTTCAGATGCTATAGATCGGGTGTTTCTGAGTGTGGAAAACGTGGGTAGTGAACACAATTCCTTGCAGAGTGGAGCAGTGAAAGGTGAGGAGCGAGATGGAGGGAAGGACCGATCAAAGAAAAAAGGGAGGAAGAAGGAAACTGTGGATTTGAGGAATCTTCTACAGATGTGTGCACAATCTGTGTATGCCAATGACATTAGAGCTGCCACCGAATTACTAAAGCAGATTCGGCAACACTCTTCTCCCTTTGGAGATGCATCGCAGAGGCTAGCTCACTACTTCGCCAATGGTCTTGATGCACGCTTGGTTGGGGCTGGTTCTGGCGGTCATGAACAATTTTCTTTTCTGAACTCTCAGAGGATTACTGCTGCAGAGTACCTGAAGGCATATCAAGTGTTTCTATCTTCCACCCCTTTCAAAAAGTTTACATATTTCTTTGCAAACACAATGATTATGGAAGCTGCTGCAAAATCAGAAACCGTCCATATCATTGATTTTGGCATCCTGTATGGTTTTCAGTGGCCAATTCTTATAAAGTTTTTATCAAACAGAGAGGGTGGTCCTCCCAAGCTGAGGATCACAGGGATAGAGTTTCCCCAACCAGGCTTTCGTCCCTCTGAAAGGATTGAGGAGACGGGTCACCGTCTTGCTAACTATTGTAAGCGTTACAATGTTCCCTTTGAATACCATGCCATAGCATCAAGGAACTGGGAAACTATTCAGGTGGAAGCCCTTAAAATTGAGAGCAATGAGATAGTTGCTGTCAACTGTCACATGAGGTTTGAACATTTACTGGATGAGAGCACTGTTGAAGTTAACAGTCCTAGAAATGCAGTCCTGCATTTGATCAGGAAGATAAATCCGGATATCTTTACTCAGATCATTGTTAATGGATCATATAGTTCCCCTTTCTTTACCACACGGTTTAAGGAGGCACTGTTCCATTTTTCTGCTGTTTATGATCTGTTTGACACTGTCATACCTCGTGAAAACGATTGGAGAATGACGATTGAGAGAGAGCTTTTGGGTCGGGAGGCTATGAATGTTATAGCGTGTGAAGGTTCTGACAGGGTTCAGAGACCTGAGACATACAAACAATGGCAAGTTAGGAATACAAGGGCCGGTTTCAAGCAGCTTCCATTGAAGGAGGAATTGATGGCCAAATTTAGGACTAAGTTAAAGGATTATCACAGAGATTTTGTCTTCGATGAAGATAACAATTGGATGATTCAAGGTTGGAAAGGCCGCATTTTTAATGCTTCCACTTGTTGGGTGCCCACATAA 2007 0.435 MEPNFLSDDLFDESESISYLSESLGFARMDPPPEDNDFSETVKFISQILMEENVQLQNPFYDSLTLQVTEKSFYDTLVGNLSPNQHALVLSPQAETTTTTTNNNNSSFLDEYFPSPDSASASASALQFNPHTLSQPPSFTVCHGFSDLDSSIAKILAQNMFNDADSVSQFRRGLEEATKFLPFGPELVTGLHSNGEEQINNFGVNFKSRKNHERQERDTTEEEEGRSSKQSTLSLVDESDISDAIDRVFLSVENVGSEHNSLQSGAVKGEERDGGKDRSKKKGRKKETVDLRNLLQMCAQSVYANDIRAATELLKQIRQHSSPFGDASQRLAHYFANGLDARLVGAGSGGHEQFSFLNSQRITAAEYLKAYQVFLSSTPFKKFTYFFANTMIMEAAAKSETVHIIDFGILYGFQWPILIKFLSNREGGPPKLRITGIEFPQPGFRPSERIEETGHRLANYCKRYNVPFEYHAIASRNWETIQVEALKIESNEIVAVNCHMRFEHLLDESTVEVNSPRNAVLHLIRKINPDIFTQIIVNGSYSSPFFTTRFKEALFHFSAVYDLFDTVIPRENDWRMTIERELLGREAMNVIACEGSDRVQRPETYKQWQVRNTRAGFKQLPLKEELMAKFRTKLKDYHRDFVFDEDNNWMIQGWKGRIFNASTCWVPT 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00013 668 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 224 655 IPR005202 -
Vium6003g00013 668 MobiDBLite consensus disorder prediction 265 287 - -
Vium6003g00013 668 ProSiteProfiles GRAS family profile. 282 666 IPR005202 -
Vium6003g00013 668 MobiDBLite consensus disorder prediction 202 235 - -
Vium6003g00013 668 MobiDBLite consensus disorder prediction 207 228 - -
Vium6003g00013 668 Pfam GRAS domain family 291 665 IPR005202 -
Vium6003g00013 668 MobiDBLite consensus disorder prediction 260 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00013 Vium-Chr6003 59889 62817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00013 41 668 GRAS Transcription Factor Family AT1G07530 44.058 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium6003g00013 GRAS 1.9e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00013 - - gmx:100795855 929.087