Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6003g00012 ATGCTCTCCATGGATTCCCTTTTGGACAATTTTCCTGGTTCGGTAAATGGGTTCATATCTGAAAACGGTTCTGTCTCGTTGTTTACGAATCAGAACAGGGTAAGTGAGTTCAAGTTGGATGATTCATCTGTCTCGGTGTTTACGAATCCGAACGGGGGAAGGAAATTCAAGTTGGATGATTCACGTTCCCCGTCAGAGTCTGCCTCTGATGATGCTCCCTCTTCTGGGACAAGCTCTGACGGAGAACACACAGAGAGTACTAAACTCTGCAATCCCATGCTCAGGTTTATAAGTGATATCCTCATGGATGAAGAGGATGATTTGGAGCGCAAGCCCTGCATGTTGCAGGATTGTTTGAGACTCCAGGCTGCTGAAAAATCATTCTATGATGCTTTGGTTCATAGTTACCCATCATCACCTCGTCAATTTAACGATAACCCTGACCCAGATGATAATTTTGGTGGAACCACTAGTTCTGAGAGTTACGGCAGTTATACCACTGACCATTCATGCGAGTCTGATAAGTTTAACGGTGCTGGTGATTTTGAGTCTTATTTGCTACAAAGATCGTTGCATAATTCTCCGGAACACGCTTATGTTACTCCTGATCTGATTAGAGAGGCACAAGCTGGGTTCCAATTTTCAAATGGAGCTTGGAATTTGATTCAGTCGCAGAACAAGGCGGGCGTAATTGAAGAGAGTGTGACGAGGACAGGCAAAGGATCAAGGGAGAAGAGGAGCCATCTCATGAAAGATGATGTCTCACATGAAGAAGAGGAGAGAAGCAATAAGCTTTCAGCTGTCTACTCTGATGATTCGGAGTTATGTAGCATGTTCGATGAAGTGCTACTTTACAATGATGGCAAGAGTCCAGCCTTTTGTAAATCTGACCGTGAACCTTCATCATTACAGCTTGCTGATTCAGGAGGATCTAATGGGAAGAAAACACGTTCGAAGAAAGGTTCCAACAAGGGAAAAAATGCAAGAACAACGGTGGATTTATGGACTTTGCTAACTCAATGCGCACAAGCTGTGGCTAGCTTTGATCCAAGGACTGCAAATGAAATCCTCAAGCAGATTAGGCAGCACTCTTCACCTTTAGGCGATGGACTTCAGCGCTTGGCTCACTACTTTGCCGATGGCCTTGAGACAAGGTTAGCTGCTGGGACACCAAAGTTCATGCTGTTTCAGTCAGCATCTGCTGCAGATATGTTAAAAGCTTACAGAGTGTATGTCACATCATCACCATTTCACTGGATGTCATTTTTCATGGCTAACCGTACTATTCTGAAGTTTACACAAAGTGAAAGCAGTATTCACATTATTGACTTTGGGATTAGCTATGGTTTCCAGTGGCCTTGCCTCATCCAACGGCTTTCACAGAGACCAGGCGGTCCTCCAAAGATTCGTATAACAGGAATTGATTTTCCTCAGTCAGGGTTTAGGCCAGCTGAAAGGGTAGAGGAGACGGGGCGACGCTTAGAGAAGTACTGCAAGAGATTTGGAGTCCCTTTTGAGTACAATTGCCTTGCTCAGAAATGGGAAACCATAAGACTTGAGGACCTCAAACTTGATAGGAGTGAAGTAACTGTGGTTAACTGTATGTACAGATTGAAGAACCTGTCGGATGAAACTGTGACTGTAGACTGTCCTAGAGATGCGGTGCTGAGGTTGATCAGGAGGATCAATCCGACCATCTTCATGCATGGGGTTGGCAATGGCACCTACAATGCACCATTCTTCTTGACAAGGTTCAGGGAAGCACTCTTCCACTTCTCAGCATTGTTTGATATGTTTGAAGCTAATGTGCCTCGGGAAGATCCATCTAGACTTATGTTTGAGAAAGGGTTGTTTGGAAGGGACGCAATCAATGTCATAGCATGTGAGGGGGCAGAGAGGGTTGAAAGGCCAGAGACCTACAAGCAATGGCAGGTTAGAAACCAGAGAGCAAGGTTCAAGCAACTTTCATTGAACAGAGACCTCGTGAACAAAGTAAAGGAAATGGTGAAGAAGGAATATCATAAAGATTTTACAGTAGATGAGGATGGCAAGTGGGTTTTGCAAGGATGGAAAGGACGTATTCTTTTTGCTCTTTCTTGTTGGGTTCCTGCTTGA 2115 0.4444 MLSMDSLLDNFPGSVNGFISENGSVSLFTNQNRVSEFKLDDSSVSVFTNPNGGRKFKLDDSRSPSESASDDAPSSGTSSDGEHTESTKLCNPMLRFISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDALVHSYPSSPRQFNDNPDPDDNFGGTTSSESYGSYTTDHSCESDKFNGAGDFESYLLQRSLHNSPEHAYVTPDLIREAQAGFQFSNGAWNLIQSQNKAGVIEESVTRTGKGSREKRSHLMKDDVSHEEEERSNKLSAVYSDDSELCSMFDEVLLYNDGKSPAFCKSDREPSSLQLADSGGSNGKKTRSKKGSNKGKNARTTVDLWTLLTQCAQAVASFDPRTANEILKQIRQHSSPLGDGLQRLAHYFADGLETRLAAGTPKFMLFQSASAADMLKAYRVYVTSSPFHWMSFFMANRTILKFTQSESSIHIIDFGISYGFQWPCLIQRLSQRPGGPPKIRITGIDFPQSGFRPAERVEETGRRLEKYCKRFGVPFEYNCLAQKWETIRLEDLKLDRSEVTVVNCMYRLKNLSDETVTVDCPRDAVLRLIRRINPTIFMHGVGNGTYNAPFFLTRFREALFHFSALFDMFEANVPREDPSRLMFEKGLFGRDAINVIACEGAERVERPETYKQWQVRNQRARFKQLSLNRDLVNKVKEMVKKEYHKDFTVDEDGKWVLQGWKGRILFALSCWVPA 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6003g00012 704 MobiDBLite consensus disorder prediction 234 266 - -
Vium6003g00012 704 MobiDBLite consensus disorder prediction 296 327 - -
Vium6003g00012 704 MobiDBLite consensus disorder prediction 237 266 - -
Vium6003g00012 704 MobiDBLite consensus disorder prediction 301 316 - -
Vium6003g00012 704 Pfam GRAS domain family 336 701 IPR005202 -
Vium6003g00012 704 MobiDBLite consensus disorder prediction 67 86 - -
Vium6003g00012 704 ProSiteProfiles GRAS family profile. 325 702 IPR005202 -
Vium6003g00012 704 MobiDBLite consensus disorder prediction 50 86 - -
Vium6003g00012 704 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 262 696 IPR005202 -
Vium6003g00012 704 MobiDBLite consensus disorder prediction 138 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6003g00012 Vium-Chr6003 51408 53976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6003g00012 245 704 GRAS Transcription Factor Family AT1G07530 56.103 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium6003g00012 GRAS 6e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6003g00012 - - gmx:100815586 1074.69