Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6002g00001 ATGTTGCTTGAAATCGCAGTTGGGTTGTTGGTGCTAGGTCTGTTTCTGCACCTGCGTCCCACACCAACCGCAAAATCAAAGGCCCTTCGCCACCTTCCCAACCCTCCGAGCCCAAAGCCTAGGCTTCCGTTCGTTGGACACCTTCACCTTTTGAAAGACCAACTTCTACACCACTCTCTCATCACTCTCTCCCAACGTTATGGCCCTCTGTACTCTCTCTACTTTGGCTCTATGCCCACCGTTGTTGCCTCCACCCCTGAGCTCTTCAAACTCTTCCTTCAAACCCACGAGGCTGCTTCCTTCAACACAAGGTTCCAAACCTCTGCCATTAAGCGCCTCACTTATGACAACTCCGTTGCCATGGTTCCCTTTGGTCCTTACTGGAAGTTCATCAGGAAACTCATCATGAACGACCTCCTTAACGCCACCACCGTCAACAAGTTGAGGCCATTGAGGAGCCATGAGATCCGCAAGGTTCTCAGAGTTCTCGCCCAAAGTGCAGAGGCCCAACAACCCCTTAACGTCACCGAGGAGCTTCTCAAGTGGACCAACAACACCATCTCCATGCTCATGCTGGGTGAGGCCGAAGAGGTTAGAGATTTGGCTCGCGAGACGGTTAAGATTTTCGGAGAGTACAGTCTCACTGACTTCATCTGGCCCTTGAAGAAGCTCAAGTTTGGAAAGTACGAGAAGAGGATTGATGAAATATTCAACAAGTTCGACCCCGTCATTGAGAAGGTTATCAAGAAGCGCCAAGAGATCGTGAGAAGGAGAAAGAATGGAGAAGTTGTTGAGGGAGAGCAGAGCGGTATCTTCCTCGATACTTTGCTTGAATTCGCTGAGGACGAGACCATGGAGATCAAAATTACCAAGGAGCAGATCAAGGGTCTTGTTGTGGATTTCTTCTCAGCAGGGACAGATTCCACAGCCGTGGCAACTGAGTGGGCTTTGGCAGAGCTGATCAACAACCCTAGGGTGTTGCAAAAGGCTCGGGAAGAGGTGTACAGTGTTGTGGGAAAAGATAGACTGGTTGACGAAGTTGATACTCAAAGCCTTCCTTACATCAGGGCGATTGTGAAGGAAACATTCCGCATGCACCCACCACTCCCTGTGGTCAAGAGAAAGTGTGTGGAAGAGTGTGAGATTGATGGGTGTGTGATCCCAGAGGGTGCATTGATACTTTTCAATGTCTGGGCTGTAGGAAGAGACCCTAAGTACTGGGACAGACCATCGGAATTTCGTCCCGAGAGATTCTTAGAAAGTGGAGGTGAAGGAGGAGTTGGTCCTATTGATCTAAGGGGACAGCATTTTCAACTTCTCCCATTTGGGTCAGGTAGGAGAATGTGCCCTGGAGTGAATTTGTCTACTTCAGGAATGGCAACTCTTCTTGCATCCGTTATCCAGTGCTTTGACCTGCAAGTGGTTGACCCTCAAGGACACATACTCAAAGGTGATGATGCCAAAGTTAGCATGGAAGAGAGAGCTGGCCTCACAGTTCCCAGAAAACACAACCTCGTATGTCTTCCACTTGCAAAAACAACCATCGCAGCCAAACTCCTCTCTTCATAG 1569 0.4933 MLLEIAVGLLVLGLFLHLRPTPTAKSKALRHLPNPPSPKPRLPFVGHLHLLKDQLLHHSLITLSQRYGPLYSLYFGSMPTVVASTPELFKLFLQTHEAASFNTRFQTSAIKRLTYDNSVAMVPFGPYWKFIRKLIMNDLLNATTVNKLRPLRSHEIRKVLRVLAQSAEAQQPLNVTEELLKWTNNTISMLMLGEAEEVRDLARETVKIFGEYSLTDFIWPLKKLKFGKYEKRIDEIFNKFDPVIEKVIKKRQEIVRRRKNGEVVEGEQSGIFLDTLLEFAEDETMEIKITKEQIKGLVVDFFSAGTDSTAVATEWALAELINNPRVLQKAREEVYSVVGKDRLVDEVDTQSLPYIRAIVKETFRMHPPLPVVKRKCVEECEIDGCVIPEGALILFNVWAVGRDPKYWDRPSEFRPERFLESGGEGGVGPIDLRGQHFQLLPFGSGRRMCPGVNLSTSGMATLLASVIQCFDLQVVDPQGHILKGDDAKVSMEERAGLTVPRKHNLVCLPLAKTTIAAKLLSS 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6002g00001 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Vium6002g00001 522 SUPERFAMILY Cytochrome P450 30 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6002g00001 522 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6002g00001 522 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6002g00001 522 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6002g00001 522 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6002g00001 522 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6002g00001 522 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6002g00001 522 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6002g00001 522 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6002g00001 522 PANTHER STEROID 21-HYDROXYLASE-RELATED 26 502 - -
Vium6002g00001 522 Pfam Cytochrome P450 36 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6002g00001 522 CDD CYP93 68 509 - -
Vium6002g00001 522 Gene3D Cytochrome P450 24 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6002g00001 522 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6002g00001 522 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6002g00001 522 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6002g00001 Vium-Chr6002 25052 26907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6002g00001 32 512 Cytochrome P450 AT5G06900 36.789 7.53e-106 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6002g00001 K23179 K24188 gmx:100037450 906.746