Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5997g00002 ATGAAGGAAAGCAGTGATGGGTTTGTGAGGGCGGATCAGATTGATCTGAAGAGCATAGATGAACAGTTGGAGAGGCACCTCAACAAGGTGCTCACCATAGATAAGAAAAAGCGTTCTGATGAGGACGAAGATGCTGATCAGGTTCATGTTCACACCAGTGCCACTGCCTCTCCCAAATTCAGACCCGCCTCTGCTAGGCTAAGTCTCAAGAAGCAAAAGCAGGACTGGGAGATTGATCCTTCTAAACTCATCATCAAAAGTGTCATAGCTCGTGGCACTTTTGGCACTGTTCATCGTGGTGTTTATGATACTCAAGATGTTGCTGTGAAATTGTTGGACTGGGGTGAGGAAGGACAAAGGACAGAAGCAGAAATTGCCTCCCTGAGAGCAGCTTTTACACAGGAAGTTGTTGTTTGGCATAAACTTGATCATCCCAATGTCACAAAGTTTATAGGGGCAACAATGGGGTCTTCAGAATTGCAGATACAAACTGATAATGGTCTGATTGGCATGCCAAGCAATTTCTGTTGTGTTGTTGTGGAGTATCTTGCTGGAGGAAATCTGAAATCATACCTAATAAAGAACAGGAGGAGGAAGCTAGCTTTTAAGATTGTCATTCAGCTGGCACTTGATCTTGCAAGAGGGCTGAGTTATCTTCACTCTCAGAAGATTGTCCATAGAGATGTGAAGACAGAAAACATGCTGTTGGACAAGACACGCACAGTTAAAATTGCTGATTTTGGGGTTGCACGTGTTGAGGCATCAAATCCTAACGATATGACTGGGGAGACTGGTACTCTTGGTTATATGGCTCCAGAGGTTTTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTCGGCATCTGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAGATTACATCAGCCGTTGTTCGACAGAATTTGAGACCAGAAATGCCAAGATGTTGCCCAAGTTCTCTGGCAAATGTCATGAAGAAATGCTGGGATGCCACTCCAGATAAGCGACCGGAGATGGATGAGGTAGTTTCCATGCTGGAAGCCATTGACACAACCAAAGGTGGAGGTATGATCCCTCATGATCAGCAACAGGGTTGTTTTTGCTTCCGCAAGCATAGAGGGCCTTGA 1161 0.4444 MKESSDGFVRADQIDLKSIDEQLERHLNKVLTIDKKKRSDEDEDADQVHVHTSATASPKFRPASARLSLKKQKQDWEIDPSKLIIKSVIARGTFGTVHRGVYDTQDVAVKLLDWGEEGQRTEAEIASLRAAFTQEVVVWHKLDHPNVTKFIGATMGSSELQIQTDNGLIGMPSNFCCVVVEYLAGGNLKSYLIKNRRRKLAFKIVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEMPRCCPSSLANVMKKCWDATPDKRPEMDEVVSMLEAIDTTKGGGMIPHDQQQGCFCFRKHRGP 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5997g00002 386 Gene3D Phosphorylase Kinase; domain 1 71 166 - -
Vium5997g00002 386 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 46 360 - -
Vium5997g00002 386 Gene3D Transferase(Phosphotransferase) domain 1 184 375 - -
Vium5997g00002 386 Pfam Protein tyrosine and serine/threonine kinase 85 357 IPR001245 GO:0004672|GO:0006468
Vium5997g00002 386 FunFam Kinase suppressor of Ras 1 72 167 - -
Vium5997g00002 386 CDD STKc_MAP3K-like 89 357 - -
Vium5997g00002 386 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672|GO:0006468
Vium5997g00002 386 PRINTS Tyrosine kinase catalytic domain signature 180 193 IPR001245 GO:0004672|GO:0006468
Vium5997g00002 386 PRINTS Tyrosine kinase catalytic domain signature 218 236 IPR001245 GO:0004672|GO:0006468
Vium5997g00002 386 PRINTS Tyrosine kinase catalytic domain signature 328 350 IPR001245 GO:0004672|GO:0006468
Vium5997g00002 386 SUPERFAMILY Protein kinase-like (PK-like) 62 357 IPR011009 -
Vium5997g00002 386 ProSiteProfiles Protein kinase domain profile. 83 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5997g00002 386 SMART serkin_6 83 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5997g00002 386 MobiDBLite consensus disorder prediction 34 49 - -
Vium5997g00002 386 FunFam Serine/threonine-protein kinase HT1 183 368 - -
Vium5997g00002 386 MobiDBLite consensus disorder prediction 34 62 - -
Vium5997g00002 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5997g00002 Vium-Chr5997 31320 35784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5997g00002 1 318 MAP Kinase Kinase Kinase AT5G50000 80.503 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium5997g00002 PK_Tyr_Ser-Thr 1.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5997g00002 - - gmx:100807921 738.028