Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5997g00001 ATGAAGAACACAAACACTACTGTCACTGCTTCATCAAAACTTGACCGCAAAACCATTGAAAGGAACCGCAGAATCCATATGAAAGCTCTCTGCTTCAAGCTTGTTTCAATCATCCCTTCCAAGTACCTCAAACCCACCAAGGACATGCTTTCCCAGCAGGACCAGCTCGATCTTGCAGCCACGTATATAAAGCATCTGAGAGAAAGAATAGAGAAACTGAAGGGGGAGAAGGAGCAAGCCATGAAAATGATGAGAACAACCCAAACCAATAACGGGATTTTCAATATTGACGCTGATCGGTTGCCTCTACTTGAGATAAAGGAGTTGGGTTCGGGCATTGAAGTGATGTTGATAAGTGGGGTGAATAAGAACTTCATGCTCTATGAAGTAATTAGTGTCCTTGAGGAAGAGGGTGTTGAAGTTGTCACTGCCAACTTCTCTACTGTTGATAATAAGATCTTTTACACAGTTCATGCTCAGGTTAAAATCTCAAGAGTTGGCGTTGAACCAACGAGGGTATATCAAAAGCTTCAGGAATTGATTGCGCCACTAGAAAGCTGGTAG 564 0.4273 MKNTNTTVTASSKLDRKTIERNRRIHMKALCFKLVSIIPSKYLKPTKDMLSQQDQLDLAATYIKHLRERIEKLKGEKEQAMKMMRTTQTNNGIFNIDADRLPLLEIKELGSGIEVMLISGVNKNFMLYEVISVLEEEGVEVVTANFSTVDNKIFYTVHAQVKISRVGVEPTRVYQKLQELIAPLESW 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5997g00001 187 FunFam Transcription factor bHLH162 3 93 - -
Vium5997g00001 187 Gene3D - 2 92 IPR036638 GO:0046983
Vium5997g00001 187 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
Vium5997g00001 187 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 180 - -
Vium5997g00001 187 Coils Coil 63 90 - -
Vium5997g00001 187 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Vium5997g00001 187 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 86 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5997g00001 Vium-Chr5997 878 2048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5997g00001 1 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 31.937 3.29e-26 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium5997g00001 HLH 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5997g00001 - - vun:114179389 351.673