Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5995g00003 ATGGGTTTTTCCTCTCTCCATGTCTGCATGAATTCATCAGATCAATGGCTGCAGGGCACAATTCACGAGGAGTGTGGGGTGGATTCTTCTTCACCATCTGCCGACATGCTTCCATGCTCGAGACCGATGACAGAGAGGAGGCTAAGACCCTCACAAGAGCAAGCCCTCAAGTGCCCTAGGTGTGAATCAACACACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCCAGGTATTTCTGCAAGACATGTAGAAGGTACTGGACCAAAGGAGGCACTCTCAGGAACATTCCTGTTGGAGGTGGTTGCAGAAAGAACAAGAAAGTTTCAACTAAGAAACACAATGACCACCAACCAGCTATTAATCAAAACCAAACACAACCTGCAGGACCCTCTTATATTCATAATCACAAAGATCTTCAACATTCCTTCTTGGATGTGCAGTTTTCCCACCTAAACAATATACTTGGGACTAATGCTGGGGTACTGGGAAACCCTAATTTCATGGATAGTAAGTATAGCATGGGCATTCTAGAGAACCCTGGGCATATTGACTTCATGGAAAGCGGGTTGGATGGTATGAATATGATTAGGGGTTCAACTAGGAGTTTGGATGTTCTTGAAAATAGTGATATGAGTGTGGGTGGTGGTGGTGTTGGGCTTGGTGATATGAGTGGCTACAATGGATTGCCATTGAATTATCAAGGTCTTTCTAGTGCAGCATTTGGAAGCATGTCCCTTGATGGAGGCATTAGCAATGTTGGAAGTTATATAATGGACTCTTGCCAGAGACTTATGTTGCCCTATGATGGAGGTCATAACATCCTTAACGGTTCAGTTGATGTGAAGCCAAACCCTAAGTTGCTGTCCCTTGAATGGCAAGATCAGGCTTGCTCTGAGGCTGAAAAAGTGTCATTGGGATATCTCAATGGTTCAGGATCATGGAGTGGCTATGGATCTTCCACAACAAACCCTTTGGTCTAG 990 0.4475 MGFSSLHVCMNSSDQWLQGTIHEECGVDSSSPSADMLPCSRPMTERRLRPSQEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKHNDHQPAINQNQTQPAGPSYIHNHKDLQHSFLDVQFSHLNNILGTNAGVLGNPNFMDSKYSMGILENPGHIDFMESGLDGMNMIRGSTRSLDVLENSDMSVGGGGVGLGDMSGYNGLPLNYQGLSSAAFGSMSLDGGISNVGSYIMDSCQRLMLPYDGGHNILNGSVDVKPNPKLLSLEWQDQACSEAEKVSLGYLNGSGSWSGYGSSTTNPLV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5995g00003 329 MobiDBLite consensus disorder prediction 107 131 - -
Vium5995g00003 329 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 42 155 IPR045174 GO:0003700|GO:0006355
Vium5995g00003 329 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Vium5995g00003 329 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
Vium5995g00003 329 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5995g00003 Vium-Chr5995 27744 29963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5995g00003 1 300 C2C2-Dof Transcription Factor Family AT5G62940 42.183 1.11e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium5995g00003 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5995g00003 - - gmx:100815061 565.459