Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5985g00006 ATGTCAGACATTCTCAAAAACCCAGAAAATTTTGTAGTTAAGGTGAGTAGGAAAAGTGTTGTGAAAGCACTGAATCCTCCACAAGAACCATTTTCAATCACTCTCTCAAATCTTGACCTGCTTTCAGGTCGTTTTCCTGTTACATACTTGTATTTCTACCGCAAACCAGAATCAGATAACTTGAAGGCTTTTGTTGATGCTCTTAAAAGCTCTCTGGCACAAATACTTGATCACTATTATCCCTTTGCTGGCCAAATTGTTCAAAATCCCAAAACCAGTGAGCCTGAGATCATATGTGACAACAATGGTGCTCTAATCATTGAAGCACACACAGATACCCCATTAAAGAGTGTAGATTTTTATGATCTCAATGAAACTCTTCAAGATAAGGTAGTCTCAGTTGAACCAGATTTCCCCACGCAAATTCAGGTGACTGAATATTCATGTGGAGGTATGTCTATAGCCTTTACTTTTGATCATGCATTAGGTGATGCCAGTTCCTTTGGTAAGTTCATTGCTTCCTGGTGTGAAATGGCTCAAAAGAAACCACTCTCCTGCATACCAGACCATACTAGACACCTTCGTGCACGTTCTTCTCCCAATTATCAACCATCGTTGGATCAAAATTTTGTGAGGTGCACCATGGAAGAGATACAGATCATGCCAATGAACCATATCTCACTGAAACGCCTTTATCATATCAAAGCATCAAGCATCAACATGCTGCAGAAACTTGCTTCTGGGAATGGAGTCAAGAAAACAAAGATTGAGGCTTTCTCCGCGTATGTATGGAAGATAATGATTGGTAGCATTGATCAAAGGCATGAAAAGTGCAAGATGGGTTGGTTGGTGGATGGAAGAGAAAGGATGGGAAGAGGTGAGAACTTGATGTCAAATTACATTGGTAATGTGCTGTCTGTGGCATTTGGGGAGGCAAGTATTGAAGAATTGAAAAAAGGGTCTATATCAGACATTGCTAACACAGTGCATGAGTCAATTTCAAAGGTAAACAATGAGGATCATTTTTTGGAGTTGATTGATTGGATTGAGTGTCATAGGCCTGGTTTGATGCTAGCAAAGGCAGTGTTGGGTGAACAAGTACCAACCCTAGTGGTGTCCTCAGGACAAAGGTTTCCTGTTACTGAGGTTGACTTTGGATTTGGGAGACCCTTGCTAGGGACAGTTTACACTAGCATTCCAAGGGTAGGAGTTGGATACATGAACCAAAGGTTAAGTGCCAAGGGTGATGGTTCATGGACTGTGTCTGCCATTTTGTGGCCAGAACTGTAA 1290 0.4124 MSDILKNPENFVVKVSRKSVVKALNPPQEPFSITLSNLDLLSGRFPVTYLYFYRKPESDNLKAFVDALKSSLAQILDHYYPFAGQIVQNPKTSEPEIICDNNGALIIEAHTDTPLKSVDFYDLNETLQDKVVSVEPDFPTQIQVTEYSCGGMSIAFTFDHALGDASSFGKFIASWCEMAQKKPLSCIPDHTRHLRARSSPNYQPSLDQNFVRCTMEEIQIMPMNHISLKRLYHIKASSINMLQKLASGNGVKKTKIEAFSAYVWKIMIGSIDQRHEKCKMGWLVDGRERMGRGENLMSNYIGNVLSVAFGEASIEELKKGSISDIANTVHESISKVNNEDHFLELIDWIECHRPGLMLAKAVLGEQVPTLVVSSGQRFPVTEVDFGFGRPLLGTVYTSIPRVGVGYMNQRLSAKGDGSWTVSAILWPEL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5985g00006 429 Pfam Transferase family 13 425 - -
Vium5985g00006 429 Gene3D - 8 208 IPR023213 -
Vium5985g00006 429 Gene3D - 221 429 IPR023213 -
Vium5985g00006 429 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 21 392 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5985g00006 36 428 Monolignol Biosynthesis Gene Families AT5G48930 27.778 1.36e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5985g00006 - - gmx:100795616 749.969