Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5985g00004 ATGGAGAAAGGGTCGTTGGAGTGTGTCAGAAAATTCTCCACAGCACCCTTTTTGTTGAAGACATATATGTTGGTTGAGGATCCTACGACCAATGATGTTGTGTCGTGGAATGATGACGGAACAACGTTTGTGGTGTTGCAACCTGCAGAGTTTGCTCGTGATCTTCTTCCAACTCTCTTCAACCATTGCAACTTCTCTAGCTTTGTTCGCCAGCTCAATACTTATGGTTTTCGTAAAGTTAGAACAAGCAGATGGGAATTTTGCAACGAGCGATTCAGAAAGGGTGAGAAAGAACTGTTATGCGAGATTAGACGTAAAAAATCATGGGTGAGCAAGAAGCAACATGGACCACAAGACTCAGATGAAGATCAAAGGTCCTTAGCATCAACCTTTTCTTCAAATTATGCAGTTCTGATGCATGAAAACAAGCGACTCAAGAAGGAGAATGAGGTATTGCACTCAGACCTTACAACCATCAATACCAAGTGCAGGGACTTGCTCGATTTGGTCACCAAATATTCATGTGCAAAGGCAGAAGGACTTGATCATAAACCAATGTTGTTTCGGATAATATTGGAACAAGTTCAAGGACAAACAGAGGTTAAAAACAACAACAAATAG 621 0.4122 MEKGSLECVRKFSTAPFLLKTYMLVEDPTTNDVVSWNDDGTTFVVLQPAEFARDLLPTLFNHCNFSSFVRQLNTYGFRKVRTSRWEFCNERFRKGEKELLCEIRRKKSWVSKKQHGPQDSDEDQRSLASTFSSNYAVLMHENKRLKKENEVLHSDLTTINTKCRDLLDLVTKYSCAKAEGLDHKPMLFRIILEQVQGQTEVKNNNK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5985g00004 206 Gene3D - 9 107 IPR036388 -
Vium5985g00004 206 FunFam Heat stress transcription factor B-4 9 107 - -
Vium5985g00004 206 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium5985g00004 206 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium5985g00004 206 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium5985g00004 206 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium5985g00004 206 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 165 IPR027725 -
Vium5985g00004 206 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium5985g00004 206 SUPERFAMILY "Winged helix" DNA-binding domain 14 106 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5985g00004 Vium-Chr5985 66340 69648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5985g00004 16 173 HSF AT2G41690 56.180 1.87e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium5985g00004 HSF_DNA-bind 1.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5985g00004 K09419 - qsu:112013936 264.618