Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium597g00003 ATGCAAGTGGCGGCAGAACTTCAACACACCCATCACCGCCAAGACACTCCGATGTGCCGCCAAATCCAGCTCACCATATCCGATCACACCCTCTCGCACACTACTGCTGTCGCTGGGGATGGCGTCTCCGACAAGCTTGACGGGGAGGATCTCTTCATTCCGCCTCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCTGGCTTCCCAGAACCTGCCAACTTCTCCTTCCTCCAAACCCTTGGCCTCCGCTCCATCATATATTTGTGTCCCGAACCTTATCCGGAGGCCAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTATCATTTTGGAATCGAGGGTCATAAGGAACCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCGCTGAAAGTTGTCCTTGATGTCAGGAATCACCCAGTTATAATTCACTGTAAGCGGGGAAAGCACCGAACGGGTTGTTTGGTAGGATGCTATAGAAAATTGCAGAAGTGGTGCTTGTCATCTGTGTTTGATGAGTATCAGCGCTTTGCAGCTGCGAAAGCAAGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCCAGCATGAAACATTTGCCTATAACCTTTTCATGTCTGAAGAGGTAA 645 0.4837 MQVAAELQHTHHRQDTPMCRQIQLTISDHTLSHTTAVAGDGVSDKLDGEDLFIPPLNFAMVDNGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYHFGIEGHKEPFVNIPEDTIREALKVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSMKHLPITFSCLKR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium597g00003 214 Pfam Tyrosine phosphatase family 53 204 IPR004861 -
Vium597g00003 214 FunFam probable tyrosine-protein phosphatase At1g05000 51 201 - -
Vium597g00003 214 Gene3D Protein tyrosine phosphatase superfamily 51 201 IPR029021 -
Vium597g00003 214 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 199 IPR029021 -
Vium597g00003 214 ProSiteProfiles Dual specificity protein phosphatase domain profile. 57 211 IPR020422 GO:0006470|GO:0008138
Vium597g00003 214 CDD PFA-DSP_Siw14 51 198 - -
Vium597g00003 214 ProSitePatterns Tyrosine specific protein phosphatases active site. 147 157 IPR016130 GO:0016311|GO:0016791
Vium597g00003 214 PRINTS Plant and fungal dual specificity phosphatase signature 52 69 IPR020428 GO:0016791
Vium597g00003 214 PRINTS Plant and fungal dual specificity phosphatase signature 108 122 IPR020428 GO:0016791
Vium597g00003 214 PRINTS Plant and fungal dual specificity phosphatase signature 125 139 IPR020428 GO:0016791
Vium597g00003 214 PRINTS Plant and fungal dual specificity phosphatase signature 89 102 IPR020428 GO:0016791
Vium597g00003 214 PANTHER TYROSINE-PROTEIN PHOSPHATASE 41 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium597g00003 Vium-Chr597 66673 70569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium597g00003 33 214 Protein tyrosine phosphatase (PTP) family AT4G03960 71.978 1.78e-100 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium597g00003 K18045 - gmx:100799968 390.963