Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5978g00009 GGCTTAGTCCGTGGGAAACGGTTCACACTAGAAGAAGATGAGCAGATTAAATCGGCTGTTTATAATTTTATAGAGTCTCGTGGTTTGGGAGATGAAGGTCTAGATATGGTTCTCCATTGCAGTTCTCATCCGGAAGTTAGATCTTGTTGGAATGAAATTGCAGCAGCCTTACCCCACAGGCCAAAGAATAGTGTGTATACTCGTGCCCATATTTTGTTTGAAAGGAGTGAGATGCGAAAGTGGACACCTGAAGAGTATGAATTTTTACGGAAGGTCAAGGAACAACATGGATCTAATTGGAGACAAGTAGCTGACGCATTGGGAAAAAATCGAATTCATGTAAAGGATGCATGGCGTAGAGTGAAATTAAGAAATACAAATAAAGGACGATGGACCCAAGAGGAGTATCAAAAGTTATTTGATTTAGTGAACCTAGACCTACGTGTGAGGGCTTCACAGGGTTATAGAAAATCAAAACATGGTATGTTGCGAGATAATATTGGTTGGGAGGCCATTGGTGATAAGTTGGTCACTAGAACCTCCGTGAGCTGTTGCCACAAGTGGTATGATAAATTAAGATCACCCATGGTTGCTACTGGTGCATGGAGTGATACTGATGACTATCGCTTGGTCGATGCTTTATATAACTTGGATGCGTGCTGCACGGAGGAGGTGGATTGGGACGATCTGCTTGAGCACAGGACTGGTGAGGCATGTAGAAAACGATGGAACCAAATTGTCCGATATATTGGAGACCATGGAGGGAAGTCATTTTCTGAGCAGGTTGAGATTCTTGCAAAAAGATATTGCCCCAACTTATTGGAAGTAAGAGAGGCCTTTGATGCAAAACCTTTGGTTTGTTGA 864 0.4259 GLVRGKRFTLEEDEQIKSAVYNFIESRGLGDEGLDMVLHCSSHPEVRSCWNEIAAALPHRPKNSVYTRAHILFERSEMRKWTPEEYEFLRKVKEQHGSNWRQVADALGKNRIHVKDAWRRVKLRNTNKGRWTQEEYQKLFDLVNLDLRVRASQGYRKSKHGMLRDNIGWEAIGDKLVTRTSVSCCHKWYDKLRSPMVATGAWSDTDDYRLVDALYNLDACCTEEVDWDDLLEHRTGEACRKRWNQIVRYIGDHGGKSFSEQVEILAKRYCPNLLEVREAFDAKPLVC 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5978g00009 287 SMART sant 77 124 IPR001005 -
Vium5978g00009 287 SMART sant 198 249 IPR001005 -
Vium5978g00009 287 SMART sant 4 75 IPR001005 -
Vium5978g00009 287 SMART sant 127 194 IPR001005 -
Vium5978g00009 287 PANTHER GB|AAC33480.1 1 286 - -
Vium5978g00009 287 SUPERFAMILY Homeodomain-like 79 139 IPR009057 -
Vium5978g00009 287 ProSiteProfiles Myb-like domain profile. 194 247 IPR001005 -
Vium5978g00009 287 CDD SANT 130 189 IPR001005 -
Vium5978g00009 287 ProSiteProfiles Myb-like domain profile. 80 122 IPR001005 -
Vium5978g00009 287 SUPERFAMILY Homeodomain-like 172 252 IPR009057 -
Vium5978g00009 287 ProSiteProfiles Myb-like domain profile. 123 192 IPR001005 -
Vium5978g00009 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 126 IPR017930 -
Vium5978g00009 287 Gene3D - 121 196 - -
Vium5978g00009 287 Gene3D - 82 120 - -
Vium5978g00009 287 Pfam Myb-like DNA-binding domain 81 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5978g00009 Vium-Chr5978 30879 31868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5978g00009 81 248 MYB Transcription Factor Family AT5G02320 25.581 2.44e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium5978g00009 Myb_DNA-bind_6 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5978g00009 - - vum:124842104 605.905