Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium5978g00008 | ATGTGGAAGTTTATATGCAAGTCGCACATTCTGATATCACGGCCTTGCCAAAGACTGAGAAAAAGATTTAGCAAAGCTGTAGAGTTTACCATAGATTACAGCCCCAATAAAAGCATCCCNGGCAAAAGTAAGGAGTATAATGAGTTTGAAAACAACGAAGATGAAGATGATGCCCAAGGTAAGAAGAGGAAGAAGAAAAAAATGAGTAAAGAAAACAAAAGTAAGGAGTATAATGTATTTCAGAGGAATGAAGGTGAAGATGATTTTGAAGGTAGGAAGAGTAAGAAGGAAAAAATGATTGAAGACAACAAAAGCAAGAATGAAAATATGATGACAAAGAAGGAAACCAAGGCAGATAATGACGAGTCTCCTAATCCTGCACGCAGTGGATTATCCAAACCCAAACGGGTAACTTTTTCTGATCAAGTGGAGGTTTGTTGTGATGGCTTAGTCCGTGGGAAACGGTTCACACTAGAAGAAGATGAGCAGATTAAATCGGCTGTTTATAATTTTATAGAGTCTCGTGGTTTGGGAGATGAAGGTCTAGATATGGTTCTCCATTGCAGTTCTCATCCGGAAGTTAGATCTTGTTGGAATGAAATTGCAGCAGCCTTACCCCACAGGCCAAAGAATAGTGTGTATACTCGTGCCCATATTTTGTTTGAAAGGAGTGAGATGCGAAAGTGGACACCTGAAGAGTATGAATTTTTACGGAAGGTCAAGGAACAACATGGATCTAATTGGAGACAAGTAGCTGACGCATTGGGAAAAAATCGAATTCATGTAAAGGATGCATGGCGTAGAGTGAAATTAAGAAATACAAATAAAGGACGATGGACCCAAGAGGAGTATCAAAAGTTATTTGATTTAGTGAACCTAGACCTACGTGTGAGGGCTTCACAGGGTTATAGAAAATCAAAACATGGTATGTTGCGAGATAATATTGGTTGGGAGGCCATTGGTGATAAGTTGGTCACTAGAACCTCCGTGAGCTGTTGCCACAAGTGGTATGATAAATTAAGATCACCCATGGTTGCTACTGGTGCATGGAGTGATACTGATGACTATCGCTTGGTCGATGCTTTATATAACTTGGATGCGTGCTGCACGGAGGAGGTGGATTGGGACGATCTGCTTGAGCACAGGACTGGTGAGGCATGTAGAAAACGATGGAACCAAATTGTCCGATATATTGGAGACCATGGAGGGAAGTCATTTTCTGAGCAGGTTGAGATTCTTGCAAAAAGATATTGCCCCAACTTATTGGAAGTAAGAGAGGCCTTTGATGCAAAACCTTTGGTTTGTTGA | 1308 | 0.4075 | MWKFICKSHILISRPCQRLRKRFSKAVEFTIDYSPNKSIPGKSKEYNEFENNEDEDDAQGKKRKKKKMSKENKSKEYNVFQRNEGEDDFEGRKSKKEKMIEDNKSKNENMMTKKETKADNDESPNPARSGLSKPKRVTFSDQVEVCCDGLVRGKRFTLEEDEQIKSAVYNFIESRGLGDEGLDMVLHCSSHPEVRSCWNEIAAALPHRPKNSVYTRAHILFERSEMRKWTPEEYEFLRKVKEQHGSNWRQVADALGKNRIHVKDAWRRVKLRNTNKGRWTQEEYQKLFDLVNLDLRVRASQGYRKSKHGMLRDNIGWEAIGDKLVTRTSVSCCHKWYDKLRSPMVATGAWSDTDDYRLVDALYNLDACCTEEVDWDDLLEHRTGEACRKRWNQIVRYIGDHGGKSFSEQVEILAKRYCPNLLEVREAFDAKPLVC | 435 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium5978g00008 | 435 | PANTHER | GB|AAC33480.1 | 45 | 434 | - | - | |
Vium5978g00008 | 435 | Pfam | Myb-like DNA-binding domain | 229 | 287 | - | - | |
Vium5978g00008 | 435 | Gene3D | - | 269 | 345 | - | - | |
Vium5978g00008 | 435 | Gene3D | - | 230 | 268 | - | - | |
Vium5978g00008 | 435 | ProSiteProfiles | Myb-like domain profile. | 271 | 340 | IPR001005 | - | |
Vium5978g00008 | 435 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 227 | 274 | IPR017930 | - | |
Vium5978g00008 | 435 | MobiDBLite | consensus disorder prediction | 33 | 135 | - | - | |
Vium5978g00008 | 435 | SMART | sant | 275 | 342 | IPR001005 | - | |
Vium5978g00008 | 435 | SMART | sant | 346 | 397 | IPR001005 | - | |
Vium5978g00008 | 435 | SMART | sant | 152 | 223 | IPR001005 | - | |
Vium5978g00008 | 435 | SMART | sant | 225 | 272 | IPR001005 | - | |
Vium5978g00008 | 435 | ProSiteProfiles | Myb-like domain profile. | 228 | 270 | IPR001005 | - | |
Vium5978g00008 | 435 | MobiDBLite | consensus disorder prediction | 43 | 62 | - | - | |
Vium5978g00008 | 435 | MobiDBLite | consensus disorder prediction | 71 | 122 | - | - | |
Vium5978g00008 | 435 | SUPERFAMILY | Homeodomain-like | 320 | 399 | IPR009057 | - | |
Vium5978g00008 | 435 | ProSiteProfiles | Myb-like domain profile. | 342 | 395 | IPR001005 | - | |
Vium5978g00008 | 435 | SUPERFAMILY | Homeodomain-like | 227 | 287 | IPR009057 | - | |
Vium5978g00008 | 435 | CDD | SANT | 278 | 337 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium5978g00008 | Vium-Chr5978 | 26852 | 28261 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium5978g00008 | 229 | 396 | MYB Transcription Factor Family | AT5G02320 | 25.581 | 1.73e-08 | 54.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Vium5978g00008 | Myb_DNA-bind_6 | 2.3e-12 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium5978g00008 | - | - | vum:124842101 | 882.093 |