Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5978g00008 ATGTGGAAGTTTATATGCAAGTCGCACATTCTGATATCACGGCCTTGCCAAAGACTGAGAAAAAGATTTAGCAAAGCTGTAGAGTTTACCATAGATTACAGCCCCAATAAAAGCATCCCNGGCAAAAGTAAGGAGTATAATGAGTTTGAAAACAACGAAGATGAAGATGATGCCCAAGGTAAGAAGAGGAAGAAGAAAAAAATGAGTAAAGAAAACAAAAGTAAGGAGTATAATGTATTTCAGAGGAATGAAGGTGAAGATGATTTTGAAGGTAGGAAGAGTAAGAAGGAAAAAATGATTGAAGACAACAAAAGCAAGAATGAAAATATGATGACAAAGAAGGAAACCAAGGCAGATAATGACGAGTCTCCTAATCCTGCACGCAGTGGATTATCCAAACCCAAACGGGTAACTTTTTCTGATCAAGTGGAGGTTTGTTGTGATGGCTTAGTCCGTGGGAAACGGTTCACACTAGAAGAAGATGAGCAGATTAAATCGGCTGTTTATAATTTTATAGAGTCTCGTGGTTTGGGAGATGAAGGTCTAGATATGGTTCTCCATTGCAGTTCTCATCCGGAAGTTAGATCTTGTTGGAATGAAATTGCAGCAGCCTTACCCCACAGGCCAAAGAATAGTGTGTATACTCGTGCCCATATTTTGTTTGAAAGGAGTGAGATGCGAAAGTGGACACCTGAAGAGTATGAATTTTTACGGAAGGTCAAGGAACAACATGGATCTAATTGGAGACAAGTAGCTGACGCATTGGGAAAAAATCGAATTCATGTAAAGGATGCATGGCGTAGAGTGAAATTAAGAAATACAAATAAAGGACGATGGACCCAAGAGGAGTATCAAAAGTTATTTGATTTAGTGAACCTAGACCTACGTGTGAGGGCTTCACAGGGTTATAGAAAATCAAAACATGGTATGTTGCGAGATAATATTGGTTGGGAGGCCATTGGTGATAAGTTGGTCACTAGAACCTCCGTGAGCTGTTGCCACAAGTGGTATGATAAATTAAGATCACCCATGGTTGCTACTGGTGCATGGAGTGATACTGATGACTATCGCTTGGTCGATGCTTTATATAACTTGGATGCGTGCTGCACGGAGGAGGTGGATTGGGACGATCTGCTTGAGCACAGGACTGGTGAGGCATGTAGAAAACGATGGAACCAAATTGTCCGATATATTGGAGACCATGGAGGGAAGTCATTTTCTGAGCAGGTTGAGATTCTTGCAAAAAGATATTGCCCCAACTTATTGGAAGTAAGAGAGGCCTTTGATGCAAAACCTTTGGTTTGTTGA 1308 0.4075 MWKFICKSHILISRPCQRLRKRFSKAVEFTIDYSPNKSIPGKSKEYNEFENNEDEDDAQGKKRKKKKMSKENKSKEYNVFQRNEGEDDFEGRKSKKEKMIEDNKSKNENMMTKKETKADNDESPNPARSGLSKPKRVTFSDQVEVCCDGLVRGKRFTLEEDEQIKSAVYNFIESRGLGDEGLDMVLHCSSHPEVRSCWNEIAAALPHRPKNSVYTRAHILFERSEMRKWTPEEYEFLRKVKEQHGSNWRQVADALGKNRIHVKDAWRRVKLRNTNKGRWTQEEYQKLFDLVNLDLRVRASQGYRKSKHGMLRDNIGWEAIGDKLVTRTSVSCCHKWYDKLRSPMVATGAWSDTDDYRLVDALYNLDACCTEEVDWDDLLEHRTGEACRKRWNQIVRYIGDHGGKSFSEQVEILAKRYCPNLLEVREAFDAKPLVC 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5978g00008 435 PANTHER GB|AAC33480.1 45 434 - -
Vium5978g00008 435 Pfam Myb-like DNA-binding domain 229 287 - -
Vium5978g00008 435 Gene3D - 269 345 - -
Vium5978g00008 435 Gene3D - 230 268 - -
Vium5978g00008 435 ProSiteProfiles Myb-like domain profile. 271 340 IPR001005 -
Vium5978g00008 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 227 274 IPR017930 -
Vium5978g00008 435 MobiDBLite consensus disorder prediction 33 135 - -
Vium5978g00008 435 SMART sant 275 342 IPR001005 -
Vium5978g00008 435 SMART sant 346 397 IPR001005 -
Vium5978g00008 435 SMART sant 152 223 IPR001005 -
Vium5978g00008 435 SMART sant 225 272 IPR001005 -
Vium5978g00008 435 ProSiteProfiles Myb-like domain profile. 228 270 IPR001005 -
Vium5978g00008 435 MobiDBLite consensus disorder prediction 43 62 - -
Vium5978g00008 435 MobiDBLite consensus disorder prediction 71 122 - -
Vium5978g00008 435 SUPERFAMILY Homeodomain-like 320 399 IPR009057 -
Vium5978g00008 435 ProSiteProfiles Myb-like domain profile. 342 395 IPR001005 -
Vium5978g00008 435 SUPERFAMILY Homeodomain-like 227 287 IPR009057 -
Vium5978g00008 435 CDD SANT 278 337 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5978g00008 Vium-Chr5978 26852 28261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5978g00008 229 396 MYB Transcription Factor Family AT5G02320 25.581 1.73e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium5978g00008 Myb_DNA-bind_6 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5978g00008 - - vum:124842101 882.093